============
desispec API
============

.. automodule:: desispec
    :members:

.. automodule:: desispec.averagefluxcalibration
    :members:

.. automodule:: desispec.badcolumn
    :members:

.. automodule:: desispec.bootcalib
    :members:

.. automodule:: desispec.calibfinder
    :members:

.. automodule:: desispec.ccdcalib
    :members:

.. automodule:: desispec.coaddition
    :members:

.. automodule:: desispec.correct_cte
    :members:

.. automodule:: desispec.cosmics
    :members:

.. automodule:: desispec.darktrail
    :members:

.. automodule:: desispec.database
    :members:

.. automodule:: desispec.database.duplicates
    :members:

.. automodule:: desispec.database.metadata
    :members:

.. automodule:: desispec.database.redshift
    :members:

.. automodule:: desispec.database.util
    :members:

.. automodule:: desispec.desi_bias_dark_1d_model
    :members:

.. automodule:: desispec.desi_create_bias_dark
    :members:

.. automodule:: desispec.desi_dashboard
    :members:

.. automodule:: desispec.desi_proc_time_distribution
    :members:

.. automodule:: desispec.efftime
    :members:

.. automodule:: desispec.emlinefit
    :members:

.. automodule:: desispec.exposure_qa
    :members:

.. automodule:: desispec.fiberbitmasking
    :members:

.. automodule:: desispec.fibercrosstalk
    :members:

.. automodule:: desispec.fiberflat
    :members:

.. automodule:: desispec.fiberflat_vs_humidity
    :members:

.. automodule:: desispec.fiberfluxcorr
    :members:

.. automodule:: desispec.fluxcalibration
    :members:

.. automodule:: desispec.focus
    :members:

.. automodule:: desispec.frame
    :members:

.. automodule:: desispec.gpu
    :members:

.. automodule:: desispec.heliocentric
    :members:

.. automodule:: desispec.image
    :members:

.. automodule:: desispec.image_model
    :members:

.. automodule:: desispec.interpolation
    :members:

.. automodule:: desispec.io
    :members:

.. automodule:: desispec.io.download
    :members:

.. automodule:: desispec.io.emlinefit
    :members:

.. automodule:: desispec.io.exposure_tile_qa
    :members:

.. automodule:: desispec.io.fiberflat
    :members:

.. automodule:: desispec.io.fiberflat_vs_humidity
    :members:

.. automodule:: desispec.io.fibermap
    :members:

.. automodule:: desispec.io.filters
    :members:

.. automodule:: desispec.io.fluxcalibration
    :members:

.. automodule:: desispec.io.frame
    :members:

.. automodule:: desispec.io.image
    :members:

.. automodule:: desispec.io.iotime
    :members:

.. automodule:: desispec.io.meta
    :members:

.. automodule:: desispec.io.params
    :members:

.. automodule:: desispec.io.photo
    :members:

.. automodule:: desispec.io.raw
    :members:

.. automodule:: desispec.io.sky
    :members:

.. automodule:: desispec.io.skycorr
    :members:

.. automodule:: desispec.io.skygradpca
    :members:

.. automodule:: desispec.io.spectra
    :members:

.. automodule:: desispec.io.table
    :members:

.. automodule:: desispec.io.tpcorrparam
    :members:

.. automodule:: desispec.io.util
    :members:

.. automodule:: desispec.io.xytraceset
    :members:

.. automodule:: desispec.joincosmics
    :members:

.. automodule:: desispec.large_trace_shifts
    :members:

.. automodule:: desispec.linalg
    :members:

.. automodule:: desispec.log
    :members:

.. automodule:: desispec.magnitude
    :members:

.. automodule:: desispec.maskbits
    :members:

.. automodule:: desispec.maskedmedian
    :members:

.. automodule:: desispec.mgii_afterburner
    :members:

.. automodule:: desispec.night_qa
    :members:

.. automodule:: desispec.parallel
    :members:

.. automodule:: desispec.pixflat
    :members:

.. automodule:: desispec.pixgroup
    :members:

.. automodule:: desispec.preproc
    :members:

.. automodule:: desispec.qproc
    :members:

.. automodule:: desispec.qproc.flavor
    :members:

.. automodule:: desispec.qproc.io
    :members:

.. automodule:: desispec.qproc.qarc
    :members:

.. automodule:: desispec.qproc.qextract
    :members:

.. automodule:: desispec.qproc.qfiberflat
    :members:

.. automodule:: desispec.qproc.qframe
    :members:

.. automodule:: desispec.qproc.qsky
    :members:

.. automodule:: desispec.qproc.rowbyrowextract
    :members:

.. automodule:: desispec.resolution
    :members:

.. automodule:: desispec.scatteredlight
    :members:

.. automodule:: desispec.scripts
    :members:

.. automodule:: desispec.scripts.archive_tilenight
    :members:

.. automodule:: desispec.scripts.assemble_fibermap
    :members:

.. automodule:: desispec.scripts.autocalib_fiberflat
    :members:

.. automodule:: desispec.scripts.average_fiberflat
    :members:

.. automodule:: desispec.scripts.badcolumn_mask
    :members:

.. automodule:: desispec.scripts.bootcalib
    :members:

.. automodule:: desispec.scripts.calibrate_tsnr_ensemble
    :members:

.. automodule:: desispec.scripts.coadd_frames
    :members:

.. automodule:: desispec.scripts.coadd_preproc
    :members:

.. automodule:: desispec.scripts.coadd_spectra
    :members:

.. automodule:: desispec.scripts.compute_dark
    :members:

.. automodule:: desispec.scripts.compute_dark_night
    :members:

.. automodule:: desispec.scripts.compute_tsnr_ensemble
    :members:

.. automodule:: desispec.scripts.createoverride
    :members:

.. automodule:: desispec.scripts.editexptable
    :members:

.. automodule:: desispec.scripts.emlinefit
    :members:

.. automodule:: desispec.scripts.exposure_qa
    :members:

.. automodule:: desispec.scripts.exposuretable
    :members:

.. automodule:: desispec.scripts.extract
    :members:

.. automodule:: desispec.scripts.fibercrosstalk
    :members:

.. automodule:: desispec.scripts.fiberflat
    :members:

.. automodule:: desispec.scripts.fit_cte_night
    :members:

.. automodule:: desispec.scripts.fluxcalibration
    :members:

.. automodule:: desispec.scripts.group_spectra
    :members:

.. automodule:: desispec.scripts.humidity_corrected_fiberflat
    :members:

.. automodule:: desispec.scripts.inspect_dark
    :members:

.. automodule:: desispec.scripts.interpolate_fiber_psf
    :members:

.. automodule:: desispec.scripts.large_trace_shifts
    :members:

.. automodule:: desispec.scripts.link_calibnight
    :members:

.. automodule:: desispec.scripts.makezmtl
    :members:

.. automodule:: desispec.scripts.master_nea
    :members:

.. automodule:: desispec.scripts.mergebundles
    :members:

.. automodule:: desispec.scripts.nightly_bias
    :members:

.. automodule:: desispec.scripts.preproc
    :members:

.. automodule:: desispec.scripts.preproc_darks_mpi
    :members:

.. automodule:: desispec.scripts.proc
    :members:

.. automodule:: desispec.scripts.proc_joint_fit
    :members:

.. automodule:: desispec.scripts.proc_night
    :members:

.. automodule:: desispec.scripts.proc_tilenight
    :members:

.. automodule:: desispec.scripts.procdashboard
    :members:

.. automodule:: desispec.scripts.processingtable
    :members:

.. automodule:: desispec.scripts.procexp
    :members:

.. automodule:: desispec.scripts.purge_night
    :members:

.. automodule:: desispec.scripts.purge_tilenight
    :members:

.. automodule:: desispec.scripts.qproc
    :members:

.. automodule:: desispec.scripts.qsomgii
    :members:

.. automodule:: desispec.scripts.qsoqn
    :members:

.. automodule:: desispec.scripts.reformat_exptables
    :members:

.. automodule:: desispec.scripts.reformat_proctables
    :members:

.. automodule:: desispec.scripts.rejectcosmics
    :members:

.. automodule:: desispec.scripts.repair_mask
    :members:

.. automodule:: desispec.scripts.select_calib_stars
    :members:

.. automodule:: desispec.scripts.sky
    :members:

.. automodule:: desispec.scripts.specex
    :members:

.. automodule:: desispec.scripts.specscore
    :members:

.. automodule:: desispec.scripts.stdstars
    :members:

.. automodule:: desispec.scripts.submit_night
    :members:

.. automodule:: desispec.scripts.submit_prod
    :members:

.. automodule:: desispec.scripts.tile_redshifts
    :members:

.. automodule:: desispec.scripts.tile_redshifts_bash
    :members:

.. automodule:: desispec.scripts.tileqa
    :members:

.. automodule:: desispec.scripts.trace_shifts
    :members:

.. automodule:: desispec.scripts.uniqpix_redshifts
    :members:

.. automodule:: desispec.scripts.update_exptable
    :members:

.. automodule:: desispec.scripts.update_spectra
    :members:

.. automodule:: desispec.scripts.zcatalog
    :members:

.. automodule:: desispec.scripts.zcatalog_wrap
    :members:

.. automodule:: desispec.scripts.zproc
    :members:

.. automodule:: desispec.scripts.zprocdashboard
    :members:

.. automodule:: desispec.sky
    :members:

.. automodule:: desispec.skycorr
    :members:

.. automodule:: desispec.skygradpca
    :members:

.. automodule:: desispec.skymag
    :members:

.. automodule:: desispec.specscore
    :members:

.. automodule:: desispec.specstatus
    :members:

.. automodule:: desispec.spectra
    :members:

.. automodule:: desispec.tile_qa
    :members:

.. automodule:: desispec.tile_qa_plot
    :members:

.. automodule:: desispec.tilecompleteness
    :members:

.. automodule:: desispec.tpcorrparam
    :members:

.. automodule:: desispec.trace_shifts
    :members:

.. automodule:: desispec.tsnr
    :members:

.. automodule:: desispec.util
    :members:

.. automodule:: desispec.validredshifts
    :members:

.. automodule:: desispec.workflow
    :members:

.. automodule:: desispec.workflow.batch
    :members:

.. automodule:: desispec.workflow.batch_writer
    :members:

.. automodule:: desispec.workflow.calibration_selection
    :members:

.. automodule:: desispec.workflow.desi_proc_funcs
    :members:

.. automodule:: desispec.workflow.exptable
    :members:

.. automodule:: desispec.workflow.proc_dashboard_funcs
    :members:

.. automodule:: desispec.workflow.processing
    :members:

.. automodule:: desispec.workflow.proctable
    :members:

.. automodule:: desispec.workflow.queue
    :members:

.. automodule:: desispec.workflow.redshifts
    :members:

.. automodule:: desispec.workflow.schedule
    :members:

.. automodule:: desispec.workflow.science_selection
    :members:

.. automodule:: desispec.workflow.submission
    :members:

.. automodule:: desispec.workflow.tableio
    :members:

.. automodule:: desispec.workflow.timing
    :members:

.. automodule:: desispec.workflow.utils
    :members:

.. automodule:: desispec.xytraceset
    :members:

.. automodule:: desispec.zcatalog
    :members:

.. automodule:: desispec.zmtl
    :members: