Index

_

_add_html_table() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) _add_js_script1() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) _add_js_script2() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) _add_ls_id() (in module desispec.database.redshift) _auth() (in module desispec.io.download) _background() (in module desispec.preproc) _build_crude_coadd_arrays() (in module desispec.coaddition) _chi2_threshold() (in module desispec.coaddition) _clipped_std_bias() (in module desispec.preproc) _coarse_overlapping_bricks() (desispec.database.metadata.Tile method) _compute_coef() (in module desispec.fluxcalibration) _compute_rowbyrow() (in module desispec.night_qa) _constants() (desispec.database.metadata.Tile method) _continuum_subtract_median() (in module desispec.trace_shifts) _create_summary_catalog_wrapper() (in module desispec.scripts.zcatalog_wrap) _deduplicate_targetid() (in module desispec.database.redshift) _dict2ndarray() (in module desispec.io.util) _extract_and_save() (in module desispec.scripts.extract) _find_zeros() (in module desispec.ccdcalib) _fit_cte_night_kwargs_wrapper() (in module desispec.scripts.fit_cte_night) _fit_flat() (in module desispec.fiberflat_vs_humidity) _frameid() (in module desispec.database.redshift) _func() (in module desispec.fluxcalibration) (in module desispec.scripts.exposure_qa) (in module desispec.scripts.tileqa) _func2() (in module desispec.fluxcalibration) _gather_tractorphot_onebrick() (in module desispec.io.photo) _gauss_pix() (in module desispec.resolution) _get_average_calibration() (in module desispec.skymag) _get_fake_qid() (in module desispec.workflow.processing) _get_slice() (desispec.spectra.Spectra method) _get_survey_program_from_filename() (in module desispec.zcatalog) _global_background() (in module desispec.preproc) _init_parser() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) _initialize_page() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) (in module desispec.workflow.proc_dashboard_funcs) _interpolated_fiberflat_vs_humidity() (in module desispec.fiberflat_vs_humidity) _iterative_masker() (in module desispec.coaddition)

_javastring() (in module desispec.night_qa) _load_smsp() (in module desispec.calibfinder) _map_download() (in module desispec.io.download) _mask_cosmics() (in module desispec.coaddition) _model_variance() (in module desispec.sky) _ordered_unique_names() (in module desispec.io.iotime) _overscan() (in module desispec.preproc) _prepare_ref_spectrum() (in module desispec.trace_shifts) _preproc_file_kwargs_wrapper() (in module desispec.scripts.preproc) _read_ctedet() (in module desispec.night_qa) _read_ctedet_campet() (in module desispec.night_qa) _read_dark() (in module desispec.night_qa) _read_image() (in module desispec.io.spectra) _read_sframesky() (in module desispec.night_qa) _readspec_healpix() (in module desispec.io.spectra) _readspec_tiles() (in module desispec.io.spectra) _reject_cosmic_rays_ala_sdss_single() (in module desispec.cosmics) _reject_cosmic_rays_ala_sdss_single_numba() (in module desispec.cosmics) _remove_conflicting_keywords() (in module desispec.spectra) _remove_loaded_targetid() (in module desispec.database.redshift) _remove_loaded_unique_id() (in module desispec.database.redshift) _resolution_coadd() (in module desispec.coaddition) _savgol_clipped() (in module desispec.preproc) _select_sciences_from_etab() (in module desispec.workflow.exptable) _select_tilenights_from_ptab() (in module desispec.workflow.proctable) _set_fibermap_columns() (in module desispec.io.fibermap) _set_science_etab_cache() (in module desispec.workflow.exptable) _set_tilenight_ptab_cache() (in module desispec.workflow.proctable) _smooth_template() (in module desispec.fluxcalibration) _sort_and_symmeterize() (in module desispec.resolution) _stack_fibermaps() (in module desispec.spectra) _supports_memmap() (in module desispec.io.util) _survey_program() (in module desispec.database.redshift) _target_unique_id() (in module desispec.database.redshift) _tileid() (in module desispec.database.redshift) _unweighted_resample() (in module desispec.interpolation) _wrap_make_tile_qa_plot() (in module desispec.scripts.tileqa) _wrap_read_redrock() (in module desispec.scripts.zcatalog)

A

ab_flux_in_ergs_s_cm2_A() (in module desispec.magnitude) actually_validate() (in module desispec.validredshifts) add_abs_data() (in module desispec.zmtl) add_badcolumn_mask() (in module desispec.badcolumn) add_columns() (in module desispec.io.util) add_cte() (in module desispec.correct_cte) add_desi_proc_joint_fit_terms() (in module desispec.workflow.desi_proc_funcs) add_desi_proc_singular_terms() (in module desispec.workflow.desi_proc_funcs) add_desi_proc_tilenight_terms() (in module desispec.workflow.desi_proc_funcs) add_missing_frames() (in module desispec.pixgroup) add_qn_data() (in module desispec.zmtl) add_sq_data() (in module desispec.zmtl) add_tileqa_data() (in module desispec.zmtl) addkeys() (in module desispec.io.util) aircorr_to_airmass() (in module desispec.workflow.exptable) airfac_to_aircorr() (in module desispec.workflow.exptable) airfac_to_airmass() (in module desispec.workflow.exptable) airmass_to_aircorr() (in module desispec.workflow.exptable) airmass_to_airfac() (in module desispec.workflow.exptable)

all_calibs_submitted() (in module desispec.workflow.processing) all_impacted_cameras() (in module desispec.io.util) annotate_fibermap() (in module desispec.io.fibermap) any_jobs_need_resubmission() (in module desispec.workflow.queue) any_jobs_not_complete() (in module desispec.workflow.queue) apply_fiberflat() (in module desispec.fiberflat) apply_flux_calibration() (in module desispec.fluxcalibration) apply_multiple_cte_effects() (in module desispec.correct_cte) applySmoothingFilter() (in module desispec.fluxcalibration) arc_joint_fit() (in module desispec.workflow.processing) archivetile() (in module desispec.scripts.archive_tilenight) area (desispec.database.metadata.Tile property) argmatch() (in module desispec.util) assemble_fibermap() (in module desispec.io.fibermap) assert_tracer() (in module desispec.tile_qa_plot) assign_dependency() (in module desispec.workflow.processing) assign_mpi() (in module desispec.workflow.desi_proc_funcs) autocalib_fiberflat() (in module desispec.fiberflat) average_fiberflat() (in module desispec.fiberflat)

B

backup_filename() (in module desispec.io.util) badfibers() (in module desispec.calibfinder) bands (desispec.spectra.Spectra property) barycentric_correction_multiplicative_factor() (in module desispec.scripts.extract) barycentric_velocity_corr_kms() (in module desispec.heliocentric) barycentric_velocity_multiplicative_corr() (in module desispec.heliocentric) batch_script_pathname() (in module desispec.workflow.processing) batch_tile_redshifts() (in module desispec.scripts.tile_redshifts) (in module desispec.scripts.tile_redshifts_bash)

bootcalib() (in module desispec.bootcalib) boxcar_extraction_from_filenames() (in module desispec.trace_shifts) Brick (class in desispec.database.metadata) brick_offset() (desispec.database.metadata.Tile method) BrickStatus (class in desispec.database.metadata) build_atcinva() (in module desispec.qproc.rowbyrowextract) build_atcinvb() (in module desispec.qproc.rowbyrowextract)

C

calc_alpha() (in module desispec.tsnr) calc_mean_std_ra_dec() (in module desispec.coaddition) calc_overscan() (in module desispec.preproc) calc_tsnr2() (in module desispec.tsnr) calc_tsnr2_cframe() (in module desispec.tsnr) calc_tsnr_fiberfracs() (in module desispec.tsnr) calculate_one_night() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) calculate_throughput_corrections() (in module desispec.sky) cameraid() (in module desispec.database.util) cameras_from_raw_data() (in module desispec.workflow.desi_proc_funcs) camword_intersection() (in module desispec.io.util) camword_to_spectros() (in module desispec.io.util) camword_union() (in module desispec.io.util) ccdregionmask() (in module desispec.calibfinder) change_exposure_table_rows() (in module desispec.scripts.editexptable) check_darknight_deps_and_update_prow() (in module desispec.workflow.processing) check_for_outputs_on_disk() (in module desispec.workflow.processing) check_link() (in module desispec.scripts.link_calibnight) check_missing_zmtl() (in module desispec.scripts.archive_tilenight) check_qframe_flavor() (in module desispec.qproc.flavor) check_queue_count() (in module desispec.workflow.queue) check_running() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) (in module desispec.workflow.proc_dashboard_funcs) (in module desispec.workflow.utils) checkfor_and_submit_joint_job() (in module desispec.workflow.processing) checkgzip() (in module desispec.io.util) chi_regnault() (in module desispec.correct_cte) chi_simplified_regnault() (in module desispec.correct_cte) cholesky_invert() (in module desispec.linalg) cholesky_solve() (in module desispec.linalg) cholesky_solve_and_invert() (in module desispec.linalg) circum_square (desispec.database.metadata.Tile property) clear_queue_state_cache() (in module desispec.workflow.queue) coadd() (in module desispec.coaddition) coadd_cameras() (in module desispec.coaddition) coadd_exposures() (in module desispec.coaddition) coadd_fibermap() (in module desispec.coaddition) collect_redshift_with_new_RR_run() (in module desispec.scripts.qsoqn) columns_not_to_append() (in module desispec.scripts.editexptable) columns_not_to_edit() (in module desispec.scripts.editexptable) columns_not_to_report() (in module desispec.scripts.editexptable) columns_to_goodcamword() (in module desispec.io.util) combine_ivar() (in module desispec.util) compare_bias() (in module desispec.ccdcalib) compare_dark() (in module desispec.ccdcalib) compare_fiberassign() (in module desispec.io.fibermap) compatible() (in module desispec.scripts.specex) compute() (desispec.tsnr.template_ensemble method) compute_ab_mag() (in module desispec.magnitude) compute_background_between_fiber_blocks() (in module desispec.preproc) compute_badcolumn_fibermask() (in module desispec.badcolumn) compute_badcolumn_specmask() (in module desispec.badcolumn) compute_bias_file() (in module desispec.ccdcalib) compute_broadband_photon_flux() (in module desispec.magnitude) compute_coadd_scores() (in module desispec.specscore) compute_coadd_tsnr_scores() (in module desispec.specscore) compute_contamination() (in module desispec.fibercrosstalk) compute_crosstalk_kernels() (in module desispec.fibercrosstalk) compute_dark_file() (in module desispec.ccdcalib)

compute_dark_parser() (in module desispec.scripts.compute_dark) compute_dx_dy_using_psf() (in module desispec.trace_shifts) compute_dx_from_cross_dispersion_profiles() (in module desispec.trace_shifts) compute_dy_from_spectral_cross_correlation() (in module desispec.trace_shifts) compute_dy_from_spectral_cross_correlations_of_frame() (in module desispec.trace_shifts) compute_dy_using_boxcar_extraction() (in module desispec.trace_shifts) compute_efftime() (in module desispec.efftime) compute_exposure_qa() (in module desispec.exposure_qa) compute_fiber_bundle_trace_shifts_using_psf() (in module desispec.trace_shifts) compute_fiberflat() (in module desispec.fiberflat) compute_flux_calibration() (in module desispec.fluxcalibration) compute_frame_scores() (in module desispec.specscore) compute_humidity_corrected_fiberflat() (in module desispec.fiberflat_vs_humidity) compute_image_model() (in module desispec.image_model) compute_nightly_bias() (in module desispec.ccdcalib) compute_overscan_step() (in module desispec.preproc) compute_pcs() (in module desispec.skygradpca) compute_sky() (in module desispec.sky) compute_skymag() (in module desispec.skymag) compute_tile_completeness_table() (in module desispec.tilecompleteness) compute_tile_qa() (in module desispec.tile_qa) configure_for_xyr() (in module desispec.skygradpca) convert_dateobs() (in module desispec.database.util) convert_to_pandas() (in module desispec.util) convolve2d() (in module desispec.pixflat) copy() (desispec.spectra.Spectra method) correct_amp() (in module desispec.correct_cte) correct_dark_trail() (in module desispec.darktrail) correct_fiber_crosstalk() (in module desispec.fibercrosstalk) correct_image_via_model() (in module desispec.correct_cte) cos_radius (desispec.database.metadata.Tile property) create_and_submit() (in module desispec.workflow.processing) create_badcol_png() (in module desispec.night_qa) create_badpetal_zmtl() (in module desispec.scripts.archive_tilenight) create_batch_script() (in module desispec.workflow.processing) create_biaspdark_batch_script() (in module desispec.workflow.batch_writer) create_camword() (in module desispec.io.util) create_ccdcalib_batch_script() (in module desispec.workflow.batch_writer) create_ctedet_pdf() (in module desispec.night_qa) create_ctedet_rowbyrow_pdf() (in module desispec.night_qa) create_dark_pdf() (in module desispec.night_qa) create_desi_proc_batch_script() (in module desispec.workflow.batch_writer) create_desi_proc_tilenight_batch_script() (in module desispec.workflow.batch_writer) create_desi_zproc_batch_script() (in module desispec.workflow.redshifts) create_exposure_tables() (in module desispec.scripts.exposuretable) create_linkcal_batch_script() (in module desispec.workflow.batch_writer) create_mask_fit() (in module desispec.mgii_afterburner) create_model() (in module desispec.mgii_afterburner) create_mp4() (in module desispec.night_qa) create_override_file() (in module desispec.scripts.createoverride) create_petalnz_pdf() (in module desispec.night_qa) create_processing_tables() (in module desispec.scripts.processingtable) create_sframesky_pdf() (in module desispec.night_qa) create_skyzfiber_png() (in module desispec.night_qa) create_summary_catalog() (in module desispec.zcatalog) create_tileqa_pdf() (in module desispec.night_qa) create_zmtl() (in module desispec.zmtl) cte_transfer_amount_regnault() (in module desispec.correct_cte) cubic() (in module desispec.tpcorrparam)

D

dark_night_parser() (in module desispec.scripts.compute_dark_night) dateobj2night() (in module desispec.util) dateobs2night() (in module desispec.util) decode_camword() (in module desispec.io.util) decode_surveyid() (in module desispec.database.util) decode_targetphotid() (in module desispec.database.util) deconstruct_keyval_reporting() (in module desispec.workflow.exptable) decorrelate_divide_and_conquer() (in module desispec.coaddition) default_nproc (in module desispec.parallel) default_obstypes_for_exptable() (in module desispec.workflow.exptable) default_obstypes_for_proctable() (in module desispec.workflow.proctable) default_prow() (in module desispec.workflow.proctable) default_system() (in module desispec.workflow.batch) define_and_assign_dependency() (in module desispec.workflow.processing) define_variable_from_environment() (in module desispec.workflow.utils) deg2pix() (in module desispec.tile_qa_plot) derive_include_exclude() (in module desispec.scripts.link_calibnight) DESI_DASHBOARD (class in desispec.desi_dashboard) desi_link_calibnight_command() (in module desispec.workflow.processing) desi_proc_command() (in module desispec.workflow.processing) desi_proc_joint_fit_command() (in module desispec.workflow.processing) DESI_PROC_TIME_DISTRIBUTION (class in desispec.desi_proc_time_distribution) DESI_SPECTRO_CALIB DESI_SURVEYOPS desispec module desispec.averagefluxcalibration module desispec.badcolumn module desispec.bootcalib module desispec.calibfinder module desispec.ccdcalib module desispec.coaddition module desispec.correct_cte module desispec.cosmics module desispec.darktrail module desispec.database module desispec.database.duplicates module desispec.database.metadata module desispec.database.redshift module desispec.database.util module desispec.desi_bias_dark_1d_model module desispec.desi_create_bias_dark module desispec.desi_dashboard module desispec.desi_proc_time_distribution module desispec.efftime module desispec.emlinefit module desispec.exposure_qa module desispec.fiberbitmasking module desispec.fibercrosstalk module desispec.fiberflat module desispec.fiberflat_vs_humidity module desispec.fiberfluxcorr module desispec.fluxcalibration module desispec.focus module desispec.frame module desispec.gpu module desispec.heliocentric module desispec.image module desispec.image_model module desispec.interpolation module desispec.io module desispec.io.download module desispec.io.emlinefit module desispec.io.exposure_tile_qa module desispec.io.fiberflat module desispec.io.fiberflat_vs_humidity module desispec.io.fibermap module desispec.io.filters module desispec.io.fluxcalibration module desispec.io.frame module desispec.io.image module desispec.io.iotime module desispec.io.meta module desispec.io.params module desispec.io.photo module desispec.io.raw module desispec.io.sky module desispec.io.skycorr module desispec.io.skygradpca module desispec.io.spectra module desispec.io.table module desispec.io.tpcorrparam module desispec.io.util module desispec.io.xytraceset module desispec.joincosmics module desispec.large_trace_shifts module desispec.linalg module desispec.log module desispec.magnitude module desispec.maskbits module desispec.maskedmedian module desispec.mgii_afterburner module desispec.night_qa module desispec.parallel module desispec.pixflat module desispec.pixgroup module desispec.preproc module desispec.qproc module desispec.qproc.flavor module desispec.qproc.io module desispec.qproc.qarc module desispec.qproc.qextract module desispec.qproc.qfiberflat module desispec.qproc.qframe module desispec.qproc.qsky module desispec.qproc.rowbyrowextract module desispec.resolution module desispec.scatteredlight module desispec.scripts module desispec.scripts.archive_tilenight module desispec.scripts.assemble_fibermap module desispec.scripts.autocalib_fiberflat module desispec.scripts.average_fiberflat module desispec.scripts.badcolumn_mask module desispec.scripts.bootcalib module desispec.scripts.calibrate_tsnr_ensemble module desispec.scripts.coadd_frames module

desispec.scripts.coadd_preproc module desispec.scripts.coadd_spectra module desispec.scripts.compute_dark module desispec.scripts.compute_dark_night module desispec.scripts.compute_tsnr_ensemble module desispec.scripts.createoverride module desispec.scripts.editexptable module desispec.scripts.emlinefit module desispec.scripts.exposure_qa module desispec.scripts.exposuretable module desispec.scripts.extract module desispec.scripts.fibercrosstalk module desispec.scripts.fiberflat module desispec.scripts.fit_cte_night module desispec.scripts.fluxcalibration module desispec.scripts.group_spectra module desispec.scripts.humidity_corrected_fiberflat module desispec.scripts.inspect_dark module desispec.scripts.interpolate_fiber_psf module desispec.scripts.large_trace_shifts module desispec.scripts.link_calibnight module desispec.scripts.makezmtl module desispec.scripts.master_nea module desispec.scripts.mergebundles module desispec.scripts.nightly_bias module desispec.scripts.preproc module desispec.scripts.preproc_darks_mpi module desispec.scripts.proc module desispec.scripts.proc_joint_fit module desispec.scripts.proc_night module desispec.scripts.proc_tilenight module desispec.scripts.procdashboard module desispec.scripts.processingtable module desispec.scripts.procexp module desispec.scripts.purge_night module desispec.scripts.purge_tilenight module desispec.scripts.qproc module desispec.scripts.qsomgii module desispec.scripts.qsoqn module desispec.scripts.reformat_exptables module desispec.scripts.reformat_proctables module desispec.scripts.rejectcosmics module desispec.scripts.repair_mask module desispec.scripts.select_calib_stars module desispec.scripts.sky module desispec.scripts.specex module desispec.scripts.specscore module desispec.scripts.stdstars module desispec.scripts.submit_night module desispec.scripts.submit_prod module desispec.scripts.tile_redshifts module desispec.scripts.tile_redshifts_bash module desispec.scripts.tileqa module desispec.scripts.trace_shifts module desispec.scripts.uniqpix_redshifts module desispec.scripts.update_exptable module desispec.scripts.update_spectra module desispec.scripts.zcatalog module desispec.scripts.zcatalog_wrap module desispec.scripts.zproc module desispec.scripts.zprocdashboard module desispec.sky module desispec.skycorr module desispec.skygradpca module desispec.skymag module desispec.specscore module desispec.specstatus module desispec.spectra module desispec.tile_qa module desispec.tile_qa_plot module desispec.tilecompleteness module desispec.tpcorrparam module desispec.trace_shifts module desispec.tsnr module desispec.util module desispec.validredshifts module desispec.workflow module desispec.workflow.batch module desispec.workflow.batch_writer module desispec.workflow.calibration_selection module desispec.workflow.desi_proc_funcs module desispec.workflow.exptable module desispec.workflow.proc_dashboard_funcs module desispec.workflow.processing module desispec.workflow.proctable module desispec.workflow.queue module desispec.workflow.redshifts module desispec.workflow.schedule module desispec.workflow.science_selection module desispec.workflow.submission module desispec.workflow.tableio module desispec.workflow.timing module desispec.workflow.utils module desispec.xytraceset module desispec.zcatalog module desispec.zmtl module detect_spots_in_image() (in module desispec.large_trace_shifts) determine_calibrations_to_proc() (in module desispec.workflow.calibration_selection) determine_resources() (in module desispec.workflow.batch) determine_science_to_proc() (in module desispec.workflow.science_selection) determine_specgroup() (in module desispec.io.spectra) difference_camwords() (in module desispec.io.util) difference_nights() (in module desispec.util) dist_balanced() (in module desispec.parallel) dist_discrete() (in module desispec.parallel) dist_discrete_all() (in module desispec.parallel) dist_uniform() (in module desispec.parallel) distribute_ranks_to_blocks() (in module desispec.scripts.zproc) doall() (in module desispec.skygradpca) document_in_comments() (in module desispec.scripts.editexptable) download() (in module desispec.io.download) downsample_image() (in module desispec.joincosmics) during_operating_hours() (in module desispec.workflow.timing)

E

edit_exposure_table() (in module desispec.scripts.editexptable) effmag() (desispec.tsnr.template_ensemble method) emlines_gaussfit() (in module desispec.emlinefit) empty_fibermap() (in module desispec.io.fibermap) ensure_scalar() (in module desispec.workflow.tableio) ensure_tucson_time() (in module desispec.workflow.timing) environment variable DESI_SPECTRO_CALIB DESI_SURVEYOPS FIBER_ASSIGN_DIR

erow_to_goodcamword() (in module desispec.io.util) erow_to_prow() (in module desispec.workflow.proctable) eval_crosstalk() (in module desispec.fibercrosstalk) evaluate_model() (in module desispec.skygradpca) Exposure (class in desispec.database.redshift) exposure_table_column_defs() (in module desispec.workflow.exptable) ExposureFlavor (class in desispec.database.metadata) exptable_to_proctable() (in module desispec.workflow.proctable) extract() (in module desispec.qproc.rowbyrowextract) extract_sngfibers_gaussianpsf() (in module desispec.bootcalib)

F

faflavor2program() (in module desispec.io.meta) fast_resample_spectra() (in module desispec.coaddition) fb_rdnoise() (in module desispec.tsnr) FIBER_ASSIGN_DIR fiber_gauss_new() (in module desispec.bootcalib) fiber_gauss_old() (in module desispec.bootcalib) Fiberassign (class in desispec.database.redshift) fiberassignid() (in module desispec.database.util) fibermap2tilepix() (in module desispec.pixgroup) fibermap_new2old() (in module desispec.io.fibermap) filename_to_jobname() (in module desispec.workflow.processing) find_arc_lines() (in module desispec.bootcalib) find_best_arc_flat_sets() (in module desispec.workflow.calibration_selection) find_duplicate_rows() (in module desispec.database.duplicates) find_exposure_night() (in module desispec.io.meta) find_fiber_peaks() (in module desispec.bootcalib) find_fiberassign_file() (in module desispec.io.fibermap) find_masked_rows() (in module desispec.preproc) find_most_recent() (in module desispec.workflow.desi_proc_funcs) find_new_exps() (in module desispec.workflow.proc_dashboard_funcs) find_newexp() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) find_overscan_cosmic_trails() (in module desispec.preproc) find_primary_spectra() (in module desispec.zcatalog) findcalibfile() (in module desispec.calibfinder) findfile() (in module desispec.io.meta) fit_const_plus_dark() (in module desispec.ccdcalib) fit_cte() (in module desispec.correct_cte)

fit_cte_night() (in module desispec.correct_cte) fit_dark() (in module desispec.ccdcalib) fit_mgii_line() (in module desispec.mgii_afterburner) fit_tpcorr_per_fiber() (in module desispec.tpcorrparam) fit_trace_shifts() (in module desispec.scripts.trace_shifts) fit_traces() (in module desispec.bootcalib) fit_xcoeff() (in module desispec.scripts.trace_shifts) fit_xcoeff_ycoeff() (in module desispec.scripts.trace_shifts) fit_ycoeff() (in module desispec.scripts.trace_shifts) fitsheader() (in module desispec.io.util) fix_ycoeff_outliers() (in module desispec.bootcalib) flat_joint_fit() (in module desispec.workflow.processing) flat_to_psf_flux_correction() (in module desispec.fiberfluxcorr) flux_bias_function() (in module desispec.badcolumn) format() (in module desispec.io.iotime) format_row_message() (in module desispec.workflow.calibration_selection) Frame (class in desispec.database.metadata) (class in desispec.database.redshift) frameid() (in module desispec.database.util) FrameLite (class in desispec.pixgroup) frames2spectra() (in module desispec.pixgroup) FrameStatus (class in desispec.database.metadata) free_gpu_memory() (in module desispec.gpu) freezedir() (in module desispec.scripts.archive_tilenight) from_specutils() (desispec.spectra.Spectra class method) ftype (desispec.spectra.Spectra property) func() (in module desispec.scripts.exposure_qa) (in module desispec.scripts.tileqa)

G

gather_dark_tpcorr() (in module desispec.tpcorrparam) gather_skies() (in module desispec.skygradpca) gather_targetdirs() (in module desispec.io.photo) gather_targetphot() (in module desispec.io.photo) gather_tpcorr() (in module desispec.tpcorrparam) gather_tractorphot() (in module desispec.io.photo) gen_mask() (in module desispec.tsnr) generate_calibration_dict() (in module desispec.workflow.processing) generate_monthly_table_html() (in module desispec.workflow.proc_dashboard_funcs) generate_templates() (desispec.tsnr.template_ensemble method) generate_tile_redshift_scripts() (in module desispec.scripts.tile_redshifts) (in module desispec.scripts.tile_redshifts_bash) get_all_fiberbitmask_val() (in module desispec.fiberbitmasking) get_all_fiberbitmask_with_amp() (in module desispec.fiberbitmasking) get_all_nonamp_fiberbitmask_val() (in module desispec.fiberbitmasking) get_all_science_nights_for_prod() (in module desispec.scripts.submit_prod) get_all_tiles() (in module desispec.database.metadata) get_all_valid_nights() (in module desispec.scripts.submit_prod) get_amp_ids() (in module desispec.preproc) get_amp_regions_to_cte_correct() (in module desispec.correct_cte) get_amps_for_camera() (in module desispec.io.util) get_badamp_fibers() (in module desispec.xytraceset) get_calibration_image() (in module desispec.preproc) get_chi2pix_mask() (in module desispec.scripts.extract) get_completed_tiles() (in module desispec.workflow.science_selection) get_config() (in module desispec.workflow.batch) get_cte_images() (in module desispec.correct_cte) get_cte_params() (in module desispec.correct_cte) get_ctedet_night_expid() (in module desispec.night_qa) get_dark_night_expid() (in module desispec.night_qa) get_default_qid() (in module desispec.workflow.proctable) get_default_qso_templates() (in module desispec.scripts.qsoqn) get_desi_proc_batch_file_name() (in module desispec.workflow.batch_writer) get_desi_proc_batch_file_path() (in module desispec.workflow.batch_writer) get_desi_proc_batch_file_pathname() (in module desispec.workflow.batch_writer) get_desi_proc_joint_fit_parser() (in module desispec.workflow.desi_proc_funcs) get_desi_proc_parser() (in module desispec.workflow.desi_proc_funcs) get_desi_proc_tilenight_batch_file_name() (in module desispec.workflow.batch_writer) get_desi_proc_tilenight_batch_file_pathname() (in module desispec.workflow.batch_writer) get_desi_proc_tilenight_parser() (in module desispec.workflow.desi_proc_funcs) get_desi_root_readonly() (in module desispec.io.meta) get_emlines() (in module desispec.emlinefit) get_ensemble() (in module desispec.tsnr) get_err_qid() (in module desispec.workflow.proctable) get_exp2uniqpix_map() (in module desispec.pixgroup) get_expid_vccdsec() (in module desispec.tile_qa_plot) get_expids_efftimes() (in module desispec.tile_qa_plot) get_exposure_flags() (in module desispec.workflow.exptable) get_exposure_table_column_defaults() (in module desispec.workflow.exptable) get_exposure_table_column_defs() (in module desispec.workflow.exptable) get_exposure_table_column_names() (in module desispec.workflow.exptable) get_exposure_table_column_types() (in module desispec.workflow.exptable) get_exposure_table_name() (in module desispec.workflow.exptable) get_exposure_table_path() (in module desispec.workflow.exptable) get_exposure_table_pathname() (in module desispec.workflow.exptable) get_exposures() (in module desispec.io.meta) get_failed_states() (in module desispec.workflow.queue) get_fiberbitmask_comparison_value() (in module desispec.fiberbitmasking) get_fiberbitmasked_frame() (in module desispec.fiberbitmasking) get_fiberbitmasked_frame_arrays() (in module desispec.fiberbitmasking) get_files() (in module desispec.io.meta) get_findfile_argparser() (in module desispec.io.meta) get_fits_compression_suffix() (in module desispec.io.meta) get_flagged_fibers() (in module desispec.calibfinder) get_flat_fiberbitmask_val() (in module desispec.fiberbitmasking) get_fluxcalib_fiberbitmask_val() (in module desispec.fiberbitmasking) get_gaia_ab_correction() (in module desispec.scripts.stdstars) get_good_fiberstatus() (in module desispec.validredshifts) get_hpix2upix_map() (in module desispec.pixgroup) get_image_model() (in module desispec.correct_cte) get_jobdesc_to_file_map() (in module desispec.workflow.processing) get_jobs_in_queue() (in module desispec.workflow.queue) get_json_dict() (in module desispec.workflow.utils) get_justamps_fiberbitmask() (in module desispec.fiberbitmasking) get_last_step_options() (in module desispec.workflow.exptable) get_lastnight() (in module desispec.io.meta) get_log_pathname() (in module desispec.io.util) get_logger() (in module desispec.log) get_magnitude() (in module desispec.scripts.stdstars) get_mock_slurm_data() (in module desispec.workflow.queue) get_morning_dark_night_expid() (in module desispec.night_qa)

get_night() (in module desispec.scripts.createoverride) get_night_range() (in module desispec.util) get_nightly_end_time() (in module desispec.workflow.timing) get_nightly_start_time() (in module desispec.workflow.timing) get_nightqa_outfns() (in module desispec.night_qa) get_nights() (in module desispec.io.meta) (in module desispec.workflow.proc_dashboard_funcs) get_nights_in_date_range() (in module desispec.scripts.submit_prod) get_nights_to_process() (in module desispec.scripts.submit_prod) get_nights_up_to_date() (in module desispec.io.meta) get_non_final_states() (in module desispec.workflow.queue) get_options() (in module desispec.database.duplicates) (in module desispec.database.redshift) get_parser() (in module desispec.scripts.purge_night) (in module desispec.scripts.purge_tilenight) (in module desispec.scripts.reformat_exptables) (in module desispec.scripts.reformat_proctables) get_pdarks_from_ptable() (in module desispec.workflow.proctable) get_petalqa_props() (in module desispec.tile_qa_plot) get_pipe_database() (in module desispec.io.meta) get_pipe_logdir() (in module desispec.io.meta) get_pipe_nightdir() (in module desispec.io.meta) get_pipe_pixeldir() (in module desispec.io.meta) get_pipe_rundir() (in module desispec.io.meta) get_pipe_scriptdir() (in module desispec.io.meta) get_pixel_hash() (in module desispec.workflow.redshifts) get_printable_banner() (in module desispec.workflow.utils) get_processing_table_column_defs() (in module desispec.workflow.proctable) get_processing_table_name() (in module desispec.workflow.proctable) get_processing_table_path() (in module desispec.workflow.proctable) get_processing_table_pathname() (in module desispec.workflow.proctable) get_qa_badmsks() (in module desispec.tile_qa_plot) get_qa_config() (in module desispec.tile_qa_plot) get_qa_params() (in module desispec.exposure_qa) get_qn_model_fname() (in module desispec.zmtl) get_quantz_cmap() (in module desispec.tile_qa_plot) get_queue_states_from_qids() (in module desispec.workflow.queue) get_radec_mw() (in module desispec.tile_qa_plot) get_raw_files() (in module desispec.io.meta) get_readonly_filepath() (in module desispec.io.meta) get_readout_mode() (in module desispec.preproc) get_reduced_frames() (in module desispec.io.meta) get_resampling_matrix() (in module desispec.coaddition) get_response() (in module desispec.scripts.createoverride) get_resubmission_states() (in module desispec.workflow.queue) get_rf_em_waves() (in module desispec.emlinefit) get_rowbyrow_image_model() (in module desispec.correct_cte) get_shared_desi_proc_parser() (in module desispec.workflow.desi_proc_funcs) get_sky_fibers() (in module desispec.sky) get_skysub_fiberbitmask_val() (in module desispec.fiberbitmasking) get_speclog() (in module desispec.io.util) get_spectra() (in module desispec.mgii_afterburner) get_spectrum_mask() (in module desispec.scripts.extract) get_sq_model_fname() (in module desispec.zmtl) get_stacked_dark_exposure_table() (in module desispec.scripts.compute_dark) get_stdstars_fiberbitmask_val() (in module desispec.fiberbitmasking) get_surveys_night_expids() (in module desispec.night_qa) get_targetids() (in module desispec.io.emlinefit) get_tempfilename() (in module desispec.io.util) get_termination_states() (in module desispec.workflow.queue) get_tilecov() (in module desispec.tile_qa_plot) get_tiles_cumulative() (in module desispec.workflow.science_selection) get_tracer() (in module desispec.tile_qa_plot) get_tracer_nz_program() (in module desispec.tile_qa_plot) get_tracer_zminmax() (in module desispec.tile_qa_plot) get_tracer_zok() (in module desispec.tile_qa_plot) get_transfer_function() (in module desispec.correct_cte) get_transfer_function_chi_names_guess_diff() (in module desispec.correct_cte) get_type_and_tile() (in module desispec.workflow.processing) get_viewer_cutout() (in module desispec.tile_qa_plot) get_zbins() (in module desispec.tile_qa_plot) get_zhists() (in module desispec.tile_qa_plot) get_zpix_script_pathname() (in module desispec.workflow.redshifts) get_ztile_relpath() (in module desispec.workflow.redshifts) get_ztile_script_pathname() (in module desispec.workflow.redshifts) get_ztile_script_suffix() (in module desispec.workflow.redshifts) gfa_template_ensemble (class in desispec.tsnr) globpath() (in module desispec.workflow.utils) gpu_specter_check_input_options() (in module desispec.scripts.extract) gradient_correction() (in module desispec.fiberflat) group_nspectra() (in module desispec.pixgroup) guess_default_by_dtype() (in module desispec.workflow.tableio)

H

header2night() (in module desispec.util) header2wave() (in module desispec.io.util) healpix_degrade_fixed() (in module desispec.util)

heliocentric_shift_res_data() (in module desispec.heliocentric) heliocentric_velocity_corr_kms() (in module desispec.heliocentric) heliocentric_velocity_multiplicative_corr() (in module desispec.heliocentric) hist_iotimes() (in module desispec.io.iotime)

I

id_arc_lines_using_triplets() (in module desispec.bootcalib) instantiate_exposure_table() (in module desispec.workflow.exptable) instantiate_processing_table() (in module desispec.workflow.proctable) interpolate_on_parameter_grid() (in module desispec.fluxcalibration) is_complete_set() (in module desispec.workflow.calibration_selection) is_gpu_available() (in module desispec.gpu)

is_robust_mode() (in module desispec.util) is_svn_current() (in module desispec.io.util) is_yes() (in module desispec.scripts.createoverride) isStdStar() (in module desispec.fluxcalibration) itemindices() (in module desispec.util) iterfiles() (in module desispec.io.util)

J

joint_cal_fit() (in module desispec.workflow.processing)

joint_fit() (in module desispec.workflow.processing) js_str() (in module desispec.workflow.proc_dashboard_funcs)

K

keyval_change_reporting() (in module desispec.workflow.exptable)

L

legx() (in module desispec.trace_shifts) LinearSelectionElement (class in desispec.joincosmics) list_of_expected_spot_positions() (in module desispec.trace_shifts) listpath() (in module desispec.workflow.utils) load_arcline_list() (in module desispec.bootcalib) load_data() (in module desispec.database.metadata) load_file() (in module desispec.database.redshift) load_filter() (in module desispec.io.filters) load_gaia_filter() (in module desispec.io.filters) load_gdarc_lines() (in module desispec.bootcalib) load_legacy_survey_filter() (in module desispec.io.filters)

load_override_file() (in module desispec.workflow.utils) load_parse_dict() (in module desispec.bootcalib) load_qn_model() (in module desispec.zmtl) load_raw_data_header() (in module desispec.workflow.desi_proc_funcs) load_redrock() (in module desispec.database.redshift) load_redrock_templates() (in module desispec.mgii_afterburner) load_simulated_data() (in module desispec.database.metadata) load_sq_model() (in module desispec.zmtl) load_sv1_ivar_w12() (in module desispec.scripts.zcatalog) load_table() (in module desispec.workflow.tableio) load_tables() (in module desispec.workflow.tableio) log_timer() (in module desispec.workflow.timing)

M

main() (in module desispec.database.duplicates) (in module desispec.database.metadata) (in module desispec.database.redshift) (in module desispec.heliocentric) (in module desispec.scripts.procdashboard) (in module desispec.scripts.stdstars) (in module desispec.scripts.zcatalog_wrap) (in module desispec.scripts.zproc) (in module desispec.scripts.zprocdashboard) make_all_pcs() (in module desispec.skygradpca) make_all_pcs_by_filter() (in module desispec.skygradpca) make_all_pcs_wrapper() (in module desispec.skygradpca) make_dark_scripts() (in module desispec.ccdcalib) make_joint_prow() (in module desispec.workflow.processing) make_new_zmtl() (in module desispec.zmtl) make_redshift_prow() (in module desispec.workflow.processing) make_regular_darks() (in module desispec.ccdcalib) make_tile_qa_plot() (in module desispec.tile_qa_plot) make_tnight_prow() (in module desispec.workflow.processing) make_tpcorrparam_files() (in module desispec.tpcorrparam) makepath() (in module desispec.io.util) mask32() (in module desispec.util) masked_median() (in module desispec.maskedmedian) match_same_system() (in module desispec.large_trace_shifts) match_templates() (in module desispec.fluxcalibration) matches_exptime() (in module desispec.workflow.calibration_selection) mean_psf() (in module desispec.scripts.specex) merge_psf() (in module desispec.scripts.specex) merge_tile_completeness_table() (in module desispec.tilecompleteness) mgii_fitter() (in module desispec.mgii_afterburner) mjd2night() (in module desispec.util) model() (in module desispec.qproc.rowbyrowextract) model_scattered_light() (in module desispec.scatteredlight) model_y1d() (in module desispec.ccdcalib) module desispec desispec.averagefluxcalibration desispec.badcolumn desispec.bootcalib desispec.calibfinder desispec.ccdcalib desispec.coaddition desispec.correct_cte desispec.cosmics desispec.darktrail desispec.database desispec.database.duplicates desispec.database.metadata desispec.database.redshift desispec.database.util desispec.desi_bias_dark_1d_model desispec.desi_create_bias_dark desispec.desi_dashboard desispec.desi_proc_time_distribution desispec.efftime desispec.emlinefit desispec.exposure_qa desispec.fiberbitmasking desispec.fibercrosstalk desispec.fiberflat desispec.fiberflat_vs_humidity desispec.fiberfluxcorr desispec.fluxcalibration desispec.focus desispec.frame desispec.gpu desispec.heliocentric desispec.image desispec.image_model desispec.interpolation desispec.io desispec.io.download desispec.io.emlinefit desispec.io.exposure_tile_qa desispec.io.fiberflat desispec.io.fiberflat_vs_humidity desispec.io.fibermap desispec.io.filters desispec.io.fluxcalibration desispec.io.frame desispec.io.image desispec.io.iotime desispec.io.meta desispec.io.params desispec.io.photo desispec.io.raw desispec.io.sky desispec.io.skycorr desispec.io.skygradpca desispec.io.spectra desispec.io.table desispec.io.tpcorrparam desispec.io.util desispec.io.xytraceset desispec.joincosmics desispec.large_trace_shifts desispec.linalg desispec.log desispec.magnitude desispec.maskbits desispec.maskedmedian desispec.mgii_afterburner desispec.night_qa desispec.parallel desispec.pixflat desispec.pixgroup desispec.preproc desispec.qproc desispec.qproc.flavor desispec.qproc.io desispec.qproc.qarc desispec.qproc.qextract desispec.qproc.qfiberflat desispec.qproc.qframe desispec.qproc.qsky desispec.qproc.rowbyrowextract desispec.resolution desispec.scatteredlight desispec.scripts desispec.scripts.archive_tilenight desispec.scripts.assemble_fibermap desispec.scripts.autocalib_fiberflat desispec.scripts.average_fiberflat desispec.scripts.badcolumn_mask desispec.scripts.bootcalib desispec.scripts.calibrate_tsnr_ensemble desispec.scripts.coadd_frames desispec.scripts.coadd_preproc desispec.scripts.coadd_spectra desispec.scripts.compute_dark desispec.scripts.compute_dark_night desispec.scripts.compute_tsnr_ensemble desispec.scripts.createoverride desispec.scripts.editexptable desispec.scripts.emlinefit desispec.scripts.exposure_qa desispec.scripts.exposuretable desispec.scripts.extract desispec.scripts.fibercrosstalk desispec.scripts.fiberflat desispec.scripts.fit_cte_night desispec.scripts.fluxcalibration desispec.scripts.group_spectra desispec.scripts.humidity_corrected_fiberflat desispec.scripts.inspect_dark desispec.scripts.interpolate_fiber_psf desispec.scripts.large_trace_shifts desispec.scripts.link_calibnight desispec.scripts.makezmtl desispec.scripts.master_nea desispec.scripts.mergebundles desispec.scripts.nightly_bias desispec.scripts.preproc desispec.scripts.preproc_darks_mpi desispec.scripts.proc desispec.scripts.proc_joint_fit desispec.scripts.proc_night desispec.scripts.proc_tilenight desispec.scripts.procdashboard desispec.scripts.processingtable desispec.scripts.procexp desispec.scripts.purge_night desispec.scripts.purge_tilenight desispec.scripts.qproc desispec.scripts.qsomgii desispec.scripts.qsoqn desispec.scripts.reformat_exptables desispec.scripts.reformat_proctables desispec.scripts.rejectcosmics desispec.scripts.repair_mask desispec.scripts.select_calib_stars desispec.scripts.sky desispec.scripts.specex desispec.scripts.specscore desispec.scripts.stdstars desispec.scripts.submit_night desispec.scripts.submit_prod desispec.scripts.tile_redshifts desispec.scripts.tile_redshifts_bash desispec.scripts.tileqa desispec.scripts.trace_shifts desispec.scripts.uniqpix_redshifts desispec.scripts.update_exptable desispec.scripts.update_spectra desispec.scripts.zcatalog desispec.scripts.zcatalog_wrap desispec.scripts.zproc desispec.scripts.zprocdashboard desispec.sky desispec.skycorr desispec.skygradpca desispec.skymag desispec.specscore desispec.specstatus desispec.spectra desispec.tile_qa desispec.tile_qa_plot desispec.tilecompleteness desispec.tpcorrparam desispec.trace_shifts desispec.tsnr desispec.util desispec.validredshifts desispec.workflow desispec.workflow.batch desispec.workflow.batch_writer desispec.workflow.calibration_selection desispec.workflow.desi_proc_funcs desispec.workflow.exptable desispec.workflow.proc_dashboard_funcs desispec.workflow.processing desispec.workflow.proctable desispec.workflow.queue desispec.workflow.redshifts desispec.workflow.schedule desispec.workflow.science_selection desispec.workflow.submission desispec.workflow.tableio desispec.workflow.timing desispec.workflow.utils desispec.xytraceset desispec.zcatalog desispec.zmtl

monomials() (in module desispec.trace_shifts) move_and_link_directory() (in module desispec.scripts.archive_tilenight) mpi_count_failures() (in module desispec.util)

N

native_endian() (in module desispec.io.util) needs_ctecorr() (in module desispec.correct_cte) nersc_end_time() (in module desispec.workflow.timing) nersc_format_datetime() (in module desispec.workflow.timing) nersc_start_time() (in module desispec.workflow.timing) Night (class in desispec.database.metadata) night2dateobj() (in module desispec.util) night2ymd() (in module desispec.util) night_to_month() (in module desispec.workflow.exptable)

night_to_starting_iid() (in module desispec.workflow.processing) NoGPU (class in desispec.gpu) normalize_templates() (in module desispec.fluxcalibration) num_spectra() (desispec.pixgroup.SpectraLite method) (desispec.spectra.Spectra method) num_targets() (desispec.pixgroup.SpectraLite method) (desispec.spectra.Spectra method) numba_mean() (in module desispec.preproc) numba_proj() (in module desispec.image_model)

O

offset() (desispec.database.metadata.Tile method) onedprofile_gaussian() (in module desispec.qproc.rowbyrowextract) onedprofile_gh() (in module desispec.qproc.rowbyrowextract)

option_list() (in module desispec.util) ordered_unique() (in module desispec.util) overlapping_bricks() (desispec.database.metadata.Tile method)

P

parse() (in module desispec.io.iotime) (in module desispec.scripts.link_calibnight) (in module desispec.scripts.procdashboard) (in module desispec.scripts.zproc) (in module desispec.scripts.zprocdashboard) parse_badamps() (in module desispec.io.util) parse_cameras() (in module desispec.io.util) parse_date_obs() (in module desispec.calibfinder) parse_fibers() (in module desispec.util) parse_int_args() (in module desispec.util) parse_int_list() (in module desispec.scripts.editexptable) parse_int_list_term() (in module desispec.scripts.editexptable) parse_keyval() (in module desispec.util) parse_logfile() (in module desispec.io.iotime) parse_nights() (in module desispec.util) parse_nist() (in module desispec.bootcalib) parse_nist_tbl() (in module desispec.bootcalib) parse_pgpass() (in module desispec.database.util) parse_previous_tables() (in module desispec.workflow.processing) parse_reservation() (in module desispec.workflow.batch) parse_sec_keyword() (in module desispec.preproc) path_full2web() (in module desispec.night_qa) pca_tpcorr() (in module desispec.tpcorrparam) per_exposure_normalization() (in module desispec.coaddition) petals() (desispec.database.metadata.Tile method) pgh() (in module desispec.qproc.rowbyrowextract) Photometry (class in desispec.database.redshift) pid_exists() (in module desispec.util) piston_and_tilt_to_gauge_offsets() (in module desispec.focus)

pix_subdirectory() (in module desispec.io.util) plot() (desispec.joincosmics.LinearSelectionElement method) plot_cutout() (in module desispec.tile_qa_plot) plot_emlines() (in module desispec.io.emlinefit) plot_iotimes() (in module desispec.io.iotime) plot_mw_skymap() (in module desispec.tile_qa_plot) plot_newlya() (in module desispec.night_qa) poly_fit_2d() (in module desispec.fiberflat) poly_val_2d() (in module desispec.fiberflat) polynomial_fit() (in module desispec.trace_shifts) populate_exp_night_info() (in module desispec.scripts.procdashboard) populate_monthly_tables() (in module desispec.workflow.proc_dashboard_funcs) populate_night_info_and_archive() (in module desispec.workflow.proc_dashboard_funcs) populate_night_info_and_archive_wrapper() (in module desispec.workflow.proc_dashboard_funcs) populate_z_night_info() (in module desispec.scripts.zprocdashboard) Potential (class in desispec.database.redshift) preproc() (in module desispec.preproc) preproc_file() (in module desispec.scripts.preproc) print_petal_infos() (in module desispec.tile_qa_plot) proc_night() (in module desispec.scripts.proc_night) process_arc() (in module desispec.qproc.qarc) process_column() (in module desispec.workflow.tableio) process_int_range_inclusive() (in module desispec.scripts.editexptable) process_one() (in module desispec.scripts.master_nea) process_raw() (in module desispec.io.raw) program_to_tsnr2_colname() (in module desispec.tsnr) programid() (in module desispec.database.util) psf_to_fiber_flux_correction() (in module desispec.fiberfluxcorr) purge_night() (in module desispec.scripts.purge_night) purge_tilenight() (in module desispec.scripts.purge_tilenight)

Q

q3c_index() (in module desispec.database.redshift) qa_arc_spec() (in module desispec.bootcalib) qa_fiber_arcrms() (in module desispec.bootcalib) qa_fiber_dlamb() (in module desispec.bootcalib) qa_fiber_Dx() (in module desispec.bootcalib) qa_fiber_gauss() (in module desispec.bootcalib) qa_fiber_peaks() (in module desispec.bootcalib) qa_fiber_trace() (in module desispec.bootcalib)

qa_fiberflat() (in module desispec.fiberflat) qa_fluxcalib() (in module desispec.fluxcalibration) qa_skysub() (in module desispec.sky) qproc_apply_fiberflat() (in module desispec.qproc.qfiberflat) qproc_boxcar_extraction() (in module desispec.qproc.qextract) qproc_compute_fiberflat() (in module desispec.qproc.qfiberflat) qproc_sky_subtraction() (in module desispec.qproc.qsky) queue_info_from_qids() (in module desispec.workflow.queue) queue_info_from_time_window() (in module desispec.workflow.queue)

R

radec2pix() (in module desispec.io.meta) radius (desispec.database.metadata.Tile property) rawdata_root() (in module desispec.io.meta) read() (desispec.pixgroup.FrameLite class method) (desispec.pixgroup.SpectraLite class method) read_average_flux_calibration() (in module desispec.io.fluxcalibration) read_bias() (in module desispec.preproc) read_crosstalk_parameters() (in module desispec.fibercrosstalk) read_dark() (in module desispec.preproc) read_emlines_inputs() (in module desispec.io.emlinefit) read_exposure_qa() (in module desispec.io.exposure_tile_qa) read_fiberflat() (in module desispec.io.fiberflat) read_fiberflat_vs_humidity() (in module desispec.io.fiberflat_vs_humidity) read_fibermap() (in module desispec.io.fibermap) read_flux_calibration() (in module desispec.io.fluxcalibration) read_frame() (in module desispec.io.frame) read_frame_as_spectra() (in module desispec.io.spectra) read_gfa_data() (in module desispec.tilecompleteness) read_image() (in module desispec.io.image) read_mask() (in module desispec.preproc) read_meta_frame() (in module desispec.io.frame) read_minimal_full_proctab_cols() (in module desispec.workflow.proctable) read_minimal_science_exptab_cols() (in module desispec.workflow.exptable) read_minimal_tilenight_proctab_cols() (in module desispec.workflow.proctable) read_nea() (in module desispec.tsnr) read_params() (in module desispec.io.params) read_pixflat() (in module desispec.preproc) read_qframe() (in module desispec.qproc.io) read_raw() (in module desispec.io.raw) read_raw_primary_header() (in module desispec.io.raw) read_redrock() (in module desispec.scripts.zcatalog) read_sky() (in module desispec.io.sky) read_skycorr() (in module desispec.io.skycorr) read_skycorr_pca() (in module desispec.io.skycorr) read_skygradpca() (in module desispec.io.skygradpca)

read_spectra() (in module desispec.io.spectra) read_spectra_parallel() (in module desispec.io.spectra) read_stdstar_models() (in module desispec.io.fluxcalibration) read_stdstar_templates() (in module desispec.io.fluxcalibration) read_table() (in module desispec.io.table) read_tile_qa() (in module desispec.io.exposure_tile_qa) read_tile_spectra() (in module desispec.io.spectra) read_xytraceset() (in module desispec.io.xytraceset) recompute_legendre_coefficients() (in module desispec.trace_shifts) recompute_legendre_coefficients_for_x() (in module desispec.trace_shifts) recompute_legendre_coefficients_for_y() (in module desispec.trace_shifts) recursive_submit_failed() (in module desispec.workflow.processing) redistribute_gpu_ranks() (in module desispec.gpu) redshift_fit() (in module desispec.fluxcalibration) reformat_exposure_tables() (in module desispec.scripts.reformat_exptables) reformat_processing_tables() (in module desispec.scripts.reformat_proctables) reject_cosmic_rays() (in module desispec.cosmics) reject_cosmic_rays_1d() (in module desispec.cosmics) reject_cosmic_rays_ala_sdss() (in module desispec.cosmics) reject_lines() (in module desispec.bootcalib) relsymlink() (in module desispec.io.util) remove_directory() (in module desispec.scripts.purge_tilenight) remove_slurm_environment_variables() (in module desispec.workflow.utils) replace_prefix() (in module desispec.io.util) resample_boxcar_frame() (in module desispec.trace_shifts) resample_flux() (in module desispec.interpolation) resample_spectra_lin_or_log() (in module desispec.coaddition) resample_template() (in module desispec.fluxcalibration) reset_full_ptab_cache() (in module desispec.workflow.proctable) reset_science_etab_cache() (in module desispec.workflow.exptable) reset_tilenight_ptab_cache() (in module desispec.workflow.proctable) Resolution (class in desispec.resolution) resolution_mat_tocolumns() (in module desispec.resolution) resolution_mat_torows() (in module desispec.resolution) run() (in module desispec.scripts.specex) runcmd() (in module desispec.util)

S

save_dataframe_to_fits() (in module desispec.scripts.qsomgii) save_to_fits() (in module desispec.scripts.qsoqn) SchemaMixin (class in desispec.database.redshift) science_joint_fit() (in module desispec.workflow.processing) script_bootcalib() (in module desispec.bootcalib) search_for_framefile() (in module desispec.io.frame) select() (desispec.spectra.Spectra method) select_calib_darks() (in module desispec.workflow.calibration_selection) select_targets_with_mgii_fitter() (in module desispec.scripts.qsomgii) select_valid_calib_exposures() (in module desispec.workflow.calibration_selection) select_zero_expids() (in module desispec.ccdcalib) selection_targets_with_QN() (in module desispec.scripts.qsoqn) set_backend() (in module desispec.util) set_calibrator_flag() (in module desispec.workflow.processing) set_mwd() (in module desispec.tile_qa_plot) setup_db() (in module desispec.database.redshift) shift_resolution_matrix_by_pixel() (in module desispec.resolution) shift_ycoef_using_external_spectrum() (in module desispec.trace_shifts) shorten_filename() (in module desispec.io.meta) sigmas_from_arc() (in module desispec.qproc.qarc) simplified_regnault() (in module desispec.correct_cte) simulate_frame() (desispec.database.metadata.Tile method) sleep_and_report() (in module desispec.workflow.utils) sm2sp() (in module desispec.calibfinder) sp2sm() (in module desispec.calibfinder) specprod_root() (in module desispec.io.meta) Spectra (class in desispec.spectra)

SpectraLite (class in desispec.pixgroup) spectrocalib_root() (in module desispec.io.meta) spectroperf_resample_spectra() (in module desispec.coaddition) spectros_to_camword() (in module desispec.io.util) spgrpid() (in module desispec.database.util) spline_fit() (in module desispec.linalg) split_str() (in module desispec.workflow.tableio) split_targets_by_file() (in module desispec.io.spectra) sprun() (in module desispec.util) stack() (in module desispec.spectra) standardize_tabletype() (in module desispec.workflow.tableio) Status (class in desispec.database.metadata) stdouterr_redirected() (in module desispec.parallel) still_a_dependency() (in module desispec.workflow.processing) submit_batch_script() (in module desispec.workflow.processing) submit_biasnight_and_preproc_darks() (in module desispec.workflow.submission) submit_linkcal_jobs() (in module desispec.workflow.submission) submit_necessary_biasnights_and_preproc_darks() (in module desispec.workflow.submission) submit_night() (in module desispec.scripts.submit_night) submit_production() (in module desispec.scripts.submit_prod) submit_redshifts() (in module desispec.workflow.processing) submit_script() (in module desispec.workflow.queue) submit_tilenight() (in module desispec.workflow.processing) submit_tilenight_and_redshifts() (in module desispec.workflow.processing) subtract_peramp_overscan() (in module desispec.preproc) subtract_sky() (in module desispec.sky) summarize_exposure() (in module desispec.workflow.exptable) surveyid() (in module desispec.database.util)

T

table_row_to_dict() (in module desispec.workflow.proctable) tail1d() (in module desispec.qproc.rowbyrowextract) take_turns() (in module desispec.parallel) Target (class in desispec.database.redshift) target_ids() (desispec.pixgroup.SpectraLite method) (desispec.spectra.Spectra method) targetphot_datamodel() (in module desispec.io.photo) targetphotid() (in module desispec.database.util) template_ensemble (class in desispec.tsnr) test_gauge_offsets() (in module desispec.focus) Tile (class in desispec.database.metadata) (class in desispec.database.redshift)

tmark() (in module desispec.zmtl) to_fits_array() (desispec.resolution.Resolution method) to_specutils() (desispec.spectra.Spectra method) tpcorrmodel() (in module desispec.tpcorrparam) tpcorrspatialmodel() (in module desispec.tpcorrparam) trace_crude_init() (in module desispec.bootcalib) trace_fweight() (in module desispec.bootcalib) tractorphot_datamodel() (in module desispec.io.photo) tsnr2_to_efftime() (in module desispec.tsnr) tsnr_efftime() (in module desispec.scripts.calibrate_tsnr_ensemble)

U

update() (desispec.spectra.Spectra method) update_accounted_for_with_linking() (in module desispec.workflow.processing) update_and_recursively_submit() (in module desispec.workflow.processing) update_args_with_headers() (in module desispec.workflow.desi_proc_funcs) update_exposure_table() (in module desispec.scripts.update_exptable) update_frame_cache() (in module desispec.pixgroup) update_from_queue() (in module desispec.workflow.queue) update_full_ptab_cache() (in module desispec.workflow.proctable) update_queue_state_cache() (in module desispec.workflow.queue)

update_queue_state_cache_from_table() (in module desispec.workflow.queue) update_science_etab_cache() (in module desispec.workflow.exptable) update_specstatus() (in module desispec.specstatus) update_survey_keywords() (in module desispec.io.fibermap) update_table_columns() (in module desispec.zcatalog) update_tilenight_ptab_cache() (in module desispec.workflow.proctable) update_truth() (in module desispec.database.redshift) use_for_coadd() (in module desispec.coaddition) use_mpi() (in module desispec.parallel)

V

valid_night() (in module desispec.scripts.createoverride) valid_yes_no() (in module desispec.scripts.createoverride) validate() (in module desispec.validredshifts) validate_badamps() (in module desispec.io.util)

validate_night() (in module desispec.io.meta) validate_value() (in module desispec.scripts.editexptable) var_model() (in module desispec.tsnr) var_tracer() (in module desispec.tsnr) verify_variable_with_environment() (in module desispec.workflow.utils)

W

wait_for_cals() (in module desispec.workflow.timing) wavelength_grid() (desispec.spectra.Spectra method) weighted_partition() (in module desispec.parallel) what_night_is_it() (desispec.desi_proc_time_distribution.DESI_PROC_TIME_DISTRIBUTION method) (in module desispec.workflow.proc_dashboard_funcs) (in module desispec.workflow.timing) wrap_command_for_script() (in module desispec.workflow.batch_writer) wrap_long_logs() (in module desispec.util) wrapup_for_script() (in module desispec.workflow.batch_writer) write() (desispec.pixgroup.SpectraLite method) write_average_flux_calibration() (in module desispec.io.fluxcalibration) write_bintable() (in module desispec.io.util) write_emlines() (in module desispec.io.emlinefit) write_exposure_qa() (in module desispec.io.exposure_tile_qa) write_fiberflat() (in module desispec.io.fiberflat) write_fibermap() (in module desispec.io.fibermap) write_flux_calibration() (in module desispec.io.fluxcalibration) write_frame() (in module desispec.io.frame) write_html_collapse_script() (in module desispec.night_qa)

write_html_today() (in module desispec.night_qa) write_image() (in module desispec.io.image) write_nightqa_html() (in module desispec.night_qa) write_pcs() (in module desispec.skygradpca) write_psf() (in module desispec.bootcalib) write_qframe() (in module desispec.qproc.io) write_raw() (in module desispec.io.raw) write_redshift_script() (in module desispec.scripts.tile_redshifts_bash) write_sky() (in module desispec.io.sky) write_skycorr() (in module desispec.io.skycorr) write_skycorr_pca() (in module desispec.io.skycorr) write_skygradpca() (in module desispec.io.skygradpca) write_spectra() (in module desispec.io.spectra) write_stdstar_models() (in module desispec.io.fluxcalibration) write_table() (in module desispec.workflow.tableio) write_tables() (in module desispec.workflow.tableio) write_tile_qa() (in module desispec.io.exposure_tile_qa) write_traces_in_psf() (in module desispec.trace_shifts) write_xytraceset() (in module desispec.io.xytraceset) write_zmtl() (in module desispec.zmtl)

Y

ymd2night() (in module desispec.util)

Z

zcomb_selector() (in module desispec.zmtl) ZP_from_calib() (in module desispec.fluxcalibration) Zpix (class in desispec.database.redshift)

zpixid() (in module desispec.database.util) Ztile (class in desispec.database.redshift) ztileid() (in module desispec.database.util)