desispec
0.51.13
Overview
Installation
Pipeline Use
Pipeline Development and Internals
Coaddition of Spectroperfect Reductions
Quality Assurance
desispec Change Log
Full desispec API Reference
desispec
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Index
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_
_auth() (in module desispec.io.download)
_background() (in module desispec.preproc)
_clipped_std_bias() (in module desispec.preproc)
_coarse_overlapping_bricks() (desispec.database.metadata.Tile method)
_compute_coef() (in module desispec.fluxcalibration)
_constants() (desispec.database.metadata.Tile method)
_create() (desispec.pipeline.tasks.base.BaseTask method)
_deps() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fibermap.TaskFibermap method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.rawdata.TaskRawdata method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_dict2ndarray() (in module desispec.io.util)
_extract_and_save() (in module desispec.scripts.extract)
_func() (in module desispec.fluxcalibration)
_func2() (in module desispec.fluxcalibration)
_gauss_pix() (in module desispec.resolution)
_get_mags() (in module desispec.qa.qalib)
_get_slice() (desispec.spectra.Spectra method)
_global_background() (in module desispec.preproc)
_insert() (desispec.pipeline.tasks.base.BaseTask method)
_load_smsp() (in module desispec.calibfinder)
_map_download() (in module desispec.io.download)
_model_variance() (in module desispec.sky)
_option_dict() (desispec.pipeline.tasks.psfnight.TaskPSFNight method)
_option_list() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_overscan() (in module desispec.preproc)
_paths() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fibermap.TaskFibermap method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.rawdata.TaskRawdata method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_preproc_file_kwargs_wrapper() (in module desispec.scripts.preproc)
_reject_cosmic_rays_ala_sdss_single() (in module desispec.cosmics)
_reject_cosmic_rays_ala_sdss_single_numba() (in module desispec.cosmics)
_retrieve() (desispec.pipeline.tasks.base.BaseTask method)
_run() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fibermap.TaskFibermap method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.rawdata.TaskRawdata method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_run_cli() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fibermap.TaskFibermap method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.rawdata.TaskRawdata method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_run_defaults() (desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fibermap.TaskFibermap method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.rawdata.TaskRawdata method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
_run_max_mem_proc() (desispec.pipeline.tasks.base.BaseTask method)
_run_max_mem_task() (desispec.pipeline.tasks.base.BaseTask method)
_run_max_procs() (desispec.pipeline.tasks.cframe.TaskCFrame method)
_run_time() (desispec.pipeline.tasks.cframe.TaskCFrame method)
_savgol_clipped() (in module desispec.preproc)
_set_fibermap_columns() (in module desispec.io.fibermap)
_smooth_template() (in module desispec.fluxcalibration)
_sort_and_symmeterize() (in module desispec.resolution)
_state_get() (desispec.pipeline.tasks.base.BaseTask method)
_state_set() (desispec.pipeline.tasks.base.BaseTask method)
_supports_memmap() (in module desispec.io.util)
_unweighted_resample() (in module desispec.interpolation)
A
add_columns() (in module desispec.io.util)
add_missing_frames() (in module desispec.pixgroup)
addkeys() (in module desispec.io.util)
all_task_types() (in module desispec.pipeline.db)
all_tasks() (in module desispec.pipeline.db)
ampregion() (in module desispec.qa.qalib)
angstroms_per_pixel() (desispec.quicklook.qlpsf.PSF method)
apply_fiberflat() (in module desispec.fiberflat)
(in module desispec.quicklook.quickfiberflat)
apply_flux_calibration() (in module desispec.fluxcalibration)
(in module desispec.quicklook.palib)
ApplyFiberFlat (class in desispec.quicklook.procalgs)
ApplyFiberFlat_QL (class in desispec.quicklook.procalgs)
ApplyFiberFlat_QP (class in desispec.quicklook.procalgs)
ApplyFluxCalibration (class in desispec.quicklook.procalgs)
applySmoothingFilter() (in module desispec.fluxcalibration)
area (desispec.database.metadata.Tile attribute)
assemble_fibermap() (in module desispec.io.fibermap)
autocalib_fiberflat() (in module desispec.fiberflat)
average_fiberflat() (in module desispec.fiberflat)
B
badfibers() (in module desispec.calibfinder)
bands (desispec.spectra.Spectra attribute)
barycentric_correction_multiplicative_factor() (in module desispec.scripts.extract)
BaseTask (class in desispec.pipeline.tasks.base)
batch_nersc() (in module desispec.pipeline.scriptgen)
batch_shell() (in module desispec.pipeline.scriptgen)
Bias_From_Overscan (class in desispec.qa.qa_quicklook)
bootcalib() (in module desispec.bootcalib)
boxcar_extraction_from_filenames() (in module desispec.trace_shifts)
BoxcarExtract (class in desispec.quicklook.procalgs)
Brick (class in desispec.database.metadata)
brick_offset() (desispec.database.metadata.Tile method)
brick_redrock() (in module desispec.qa.qa_plots)
BrickStatus (class in desispec.database.metadata)
C
calc_overscan() (in module desispec.preproc)
Calc_XWSigma (class in desispec.qa.qa_quicklook)
Calculate_SNR (class in desispec.qa.qa_quicklook)
calculate_throughput_corrections() (in module desispec.sky)
calib() (in module desispec.qa.html)
calib_exp() (in module desispec.qa.html)
camword_to_spectros() (in module desispec.io.util)
camword_union() (in module desispec.io.util)
chain() (in module desispec.pipeline.control)
check_config() (in module desispec.quicklook.qlconfig)
Check_FiberFlat (class in desispec.qa.qa_quicklook)
Check_HDUs (class in desispec.qa.qa_quicklook)
Check_Resolution (class in desispec.qa.qa_quicklook)
check_tasks() (in module desispec.pipeline.control)
(in module desispec.pipeline.db)
checkgzip() (in module desispec.io.util)
cholesky_invert() (in module desispec.linalg)
cholesky_solve() (in module desispec.linalg)
cholesky_solve_and_invert() (in module desispec.linalg)
circum_square (desispec.database.metadata.Tile attribute)
cleanup() (desispec.pipeline.db.DataBase method)
(in module desispec.pipeline.control)
coadd() (in module desispec.coaddition)
coadd_cameras() (in module desispec.coaddition)
coadd_fibermap() (in module desispec.coaddition)
combine_ivar() (in module desispec.util)
compare_fiberassign() (in module desispec.io.fibermap)
compatible() (in module desispec.scripts.specex)
compute_background_between_fiber_blocks() (in module desispec.preproc)
compute_coadd_scores() (in module desispec.specscore)
compute_coadd_tsnr_scores() (in module desispec.specscore)
compute_dx_dy_using_psf() (in module desispec.trace_shifts)
compute_dx_from_cross_dispersion_profiles() (in module desispec.trace_shifts)
compute_dy_from_spectral_cross_correlation() (in module desispec.trace_shifts)
compute_dy_from_spectral_cross_correlations_of_frame() (in module desispec.trace_shifts)
compute_dy_using_boxcar_extraction() (in module desispec.trace_shifts)
compute_fiber_bundle_trace_shifts_using_psf() (in module desispec.trace_shifts)
compute_fiberflat() (in module desispec.fiberflat)
(in module desispec.quicklook.quickfiberflat)
compute_flux_calibration() (in module desispec.fluxcalibration)
compute_frame_scores() (in module desispec.specscore)
compute_non_uniform_sky() (in module desispec.sky)
compute_overscan_step() (in module desispec.preproc)
compute_polynomial_times_sky() (in module desispec.sky)
compute_sky() (in module desispec.quicklook.quicksky)
(in module desispec.sky)
compute_uniform_sky() (in module desispec.sky)
ComputeFiberflat (class in desispec.quicklook.procalgs)
ComputeFiberflat_QL (class in desispec.quicklook.procalgs)
ComputeFiberflat_QP (class in desispec.quicklook.procalgs)
ComputeSky (class in desispec.quicklook.procalgs)
ComputeSky_QL (class in desispec.quicklook.procalgs)
Config (class in desispec.quicklook.qlconfig)
continuum() (in module desispec.qa.qalib)
convert_dateobs() (in module desispec.database.util)
cos_radius (desispec.database.metadata.Tile attribute)
Count_Pixels (class in desispec.qa.qa_quicklook)
count_task_states() (desispec.pipeline.db.DataBase method)
countbins() (in module desispec.qa.qalib)
countpix() (in module desispec.qa.qalib)
CountSpectralBins (class in desispec.qa.qa_quicklook)
create() (desispec.pipeline.tasks.base.BaseTask method)
(in module desispec.pipeline.control)
create_camword() (in module desispec.io.util)
D
DataBase (class in desispec.pipeline.db)
DataBasePostgres (class in desispec.pipeline.db)
DataBaseSqlite (class in desispec.pipeline.db)
dateobs2night() (in module desispec.util)
decode_camword() (in module desispec.io.util)
decorrelate_divide_and_conquer() (in module desispec.coaddition)
default_nproc (in module desispec.parallel)
deps() (desispec.pipeline.tasks.base.BaseTask method)
DESI_SPECTRO_CALIB
desispec (module)
desispec.averagefluxcalibration (module)
desispec.bootcalib (module)
desispec.calibfinder (module)
desispec.coaddition (module)
desispec.cosmics (module)
desispec.database (module)
desispec.database.metadata (module)
desispec.database.redshift (module)
desispec.database.util (module)
desispec.fiberflat (module)
desispec.fluxcalibration (module)
desispec.frame (module)
desispec.image (module)
desispec.interpolation (module)
desispec.io (module)
desispec.io.download (module)
desispec.io.fiberflat (module)
desispec.io.fibermap (module)
desispec.io.filters (module)
desispec.io.fluxcalibration (module)
desispec.io.frame (module)
desispec.io.image (module)
desispec.io.meta (module)
desispec.io.params (module)
desispec.io.qa (module)
desispec.io.raw (module)
desispec.io.sky (module)
desispec.io.spectra (module)
desispec.io.util (module)
desispec.io.xytraceset (module)
desispec.linalg (module)
desispec.log (module)
desispec.maskbits (module)
desispec.parallel (module)
desispec.pipeline (module)
desispec.pipeline.control (module)
desispec.pipeline.db (module)
desispec.pipeline.defs (module)
desispec.pipeline.prod (module)
desispec.pipeline.run (module)
desispec.pipeline.scriptgen (module)
desispec.pipeline.tasks (module)
desispec.pipeline.tasks.base (module)
desispec.pipeline.tasks.cframe (module)
desispec.pipeline.tasks.extract (module)
desispec.pipeline.tasks.fiberflat (module)
desispec.pipeline.tasks.fiberflatnight (module)
desispec.pipeline.tasks.fibermap (module)
desispec.pipeline.tasks.fluxcalib (module)
desispec.pipeline.tasks.preproc (module)
desispec.pipeline.tasks.psf (module)
desispec.pipeline.tasks.psfnight (module)
desispec.pipeline.tasks.qadata (module)
desispec.pipeline.tasks.rawdata (module)
desispec.pipeline.tasks.redshift (module)
desispec.pipeline.tasks.sky (module)
desispec.pipeline.tasks.spectra (module)
desispec.pipeline.tasks.starfit (module)
desispec.pipeline.tasks.traceshift (module)
desispec.pixgroup (module)
desispec.preproc (module)
desispec.qa (module)
desispec.qa.html (module)
desispec.qa.qa_brick (module)
desispec.qa.qa_exposure (module)
desispec.qa.qa_frame (module)
desispec.qa.qa_multiexp (module)
desispec.qa.qa_night (module)
desispec.qa.qa_plots (module)
desispec.qa.qa_plots_ql (module)
desispec.qa.qa_prod (module)
desispec.qa.qa_quicklook (module)
desispec.qa.qalib (module)
desispec.qa.utils (module)
desispec.qproc (module)
desispec.qproc.io (module)
desispec.qproc.qextract (module)
desispec.qproc.qfiberflat (module)
desispec.qproc.qframe (module)
desispec.qproc.qsky (module)
desispec.quicklook (module)
desispec.quicklook.arcprocess (module)
desispec.quicklook.merger (module)
desispec.quicklook.palib (module)
desispec.quicklook.pas (module)
desispec.quicklook.procalgs (module)
desispec.quicklook.qas (module)
desispec.quicklook.ql_plotlib (module)
desispec.quicklook.qlboxcar (module)
desispec.quicklook.qlconfig (module)
desispec.quicklook.qlexceptions (module)
desispec.quicklook.qlheartbeat (module)
desispec.quicklook.qllogger (module)
desispec.quicklook.qlpsf (module)
desispec.quicklook.qlresolution (module)
desispec.quicklook.quickfiberflat (module)
desispec.quicklook.quicklook (module)
desispec.quicklook.quicksky (module)
desispec.resolution (module)
desispec.scripts (module)
desispec.scripts.average_fiberflat (module)
desispec.scripts.bootcalib (module)
desispec.scripts.extract (module)
desispec.scripts.fiberflat (module)
desispec.scripts.fluxcalibration (module)
desispec.scripts.group_spectra (module)
desispec.scripts.mergebundles (module)
desispec.scripts.night (module)
desispec.scripts.pipe (module)
desispec.scripts.pipe_exec (module)
desispec.scripts.preproc (module)
desispec.scripts.procexp (module)
desispec.scripts.qa_exposure (module)
desispec.scripts.qa_frame (module)
desispec.scripts.qa_prod (module)
desispec.scripts.quicklook (module)
desispec.scripts.rejectcosmics (module)
desispec.scripts.sky (module)
desispec.scripts.skysubresid (module)
desispec.scripts.specex (module)
desispec.scripts.specscore (module)
desispec.scripts.stdstars (module)
desispec.scripts.trace_shifts (module)
desispec.scripts.update_spectra (module)
desispec.sky (module)
desispec.specscore (module)
desispec.spectra (module)
desispec.trace_shifts (module)
desispec.util (module)
desispec.workflow.schedule (module)
desispec.xytraceset (module)
difference_camwords() (in module desispec.io.util)
dist_balanced() (in module desispec.parallel)
dist_discrete() (in module desispec.parallel)
dist_discrete_all() (in module desispec.parallel)
dist_uniform() (in module desispec.parallel)
do_boxcar() (desispec.quicklook.procalgs.BoxcarExtract method)
(in module desispec.quicklook.qlboxcar)
download() (in module desispec.io.download)
dry_run() (in module desispec.pipeline.run)
dryrun() (in module desispec.pipeline.control)
dump_job_env() (in module desispec.pipeline.scriptgen)
dump_pa() (desispec.quicklook.qlconfig.Config method)
dump_qa() (desispec.quicklook.qlconfig.Config method)
E
empty_fibermap() (in module desispec.io.fibermap)
environment variable
DESI_SPECTRO_CALIB
expand_config() (desispec.quicklook.qlconfig.Config method)
exposure_fiberflat() (in module desispec.qa.qa_plots)
exposure_fluxcalib() (in module desispec.qa.qa_plots)
exposure_map() (in module desispec.qa.qa_plots)
exposure_s2n() (in module desispec.qa.qa_plots)
ExposureFlavor (class in desispec.database.metadata)
Extract_QP (class in desispec.quicklook.procalgs)
extract_sngfibers_gaussianpsf() (in module desispec.bootcalib)
Extraction_2d (class in desispec.quicklook.procalgs)
F
faflavor2program() (in module desispec.io.meta)
fast_resample_spectra() (in module desispec.coaddition)
fiber_gauss_new() (in module desispec.bootcalib)
fiber_gauss_old() (in module desispec.bootcalib)
FiberAssign (class in desispec.database.redshift)
fibermap2tilepix() (in module desispec.pixgroup)
fibermap_new2old() (in module desispec.io.fibermap)
fiducialregion() (in module desispec.qa.qalib)
find_arc_lines() (in module desispec.bootcalib)
find_exposure_night() (in module desispec.io.meta)
find_fiber_peaks() (in module desispec.bootcalib)
find_fiberassign_file() (in module desispec.io.fibermap)
findcalibfile() (in module desispec.calibfinder)
findfile() (in module desispec.io.meta)
finish() (in module desispec.qa.html)
fit_traces() (in module desispec.bootcalib)
fitsheader() (in module desispec.io.util)
fix_ycoeff_outliers() (in module desispec.bootcalib)
Flexure (class in desispec.quicklook.procalgs)
Frame (class in desispec.database.metadata)
frame_fiberflat() (in module desispec.qa.qa_plots)
frame_fluxcalib() (in module desispec.qa.qa_plots)
frame_s2n() (in module desispec.qa.qa_plots)
frame_skyres() (in module desispec.qa.qa_plots)
FrameLite (class in desispec.pixgroup)
frames2spectra() (in module desispec.pixgroup)
FrameStatus (class in desispec.database.metadata)
ftype (desispec.spectra.Spectra attribute)
G
gauss() (in module desispec.qa.qalib)
gen_scripts() (in module desispec.pipeline.control)
get_all_tiles() (in module desispec.database.metadata)
get_amp_ids() (in module desispec.preproc)
get_calibration_image() (in module desispec.preproc)
get_chan_spec_exp() (in module desispec.quicklook.quicklook)
get_channel_clrs() (in module desispec.qa.qa_plots)
get_default_config() (desispec.quicklook.pas.PipelineAlg method)
(desispec.quicklook.procalgs.BoxcarExtract method)
(desispec.quicklook.procalgs.Extract_QP method)
get_exp2healpix_map() (in module desispec.pixgroup)
get_exposures() (in module desispec.io.meta)
get_files() (in module desispec.io.meta)
get_frame() (in module desispec.qa.qa_quicklook)
get_gaia_ab_correction() (in module desispec.scripts.stdstars)
get_image() (in module desispec.qa.qa_quicklook)
get_inputs() (in module desispec.qa.qa_quicklook)
get_logger() (in module desispec.log)
get_magnitude() (in module desispec.scripts.stdstars)
get_nights() (in module desispec.io.meta)
get_options() (in module desispec.database.redshift)
get_pipe_database() (in module desispec.io.meta)
get_pipe_logdir() (in module desispec.io.meta)
get_pipe_nightdir() (in module desispec.io.meta)
get_pipe_pixeldir() (in module desispec.io.meta)
get_pipe_rundir() (in module desispec.io.meta)
get_pipe_scriptdir() (in module desispec.io.meta)
get_raw_files() (in module desispec.io.meta)
get_reduced_frames() (in module desispec.io.meta)
get_resampling_matrix() (in module desispec.coaddition)
get_resolution() (in module desispec.quicklook.palib)
Get_RMS (class in desispec.qa.qa_quicklook)
get_skyres() (in module desispec.qa.utils)
get_speclog() (in module desispec.io.util)
get_states() (desispec.pipeline.db.DataBase method)
get_states_type() (desispec.pipeline.db.DataBase method)
get_sty_otype() (in module desispec.qa.qa_plots)
get_submitted() (desispec.pipeline.db.DataBase method)
get_tasks() (in module desispec.pipeline.control)
get_tasks_type() (in module desispec.pipeline.control)
get_tempfilename() (in module desispec.io.util)
getready() (desispec.pipeline.db.DataBase method)
(desispec.pipeline.tasks.base.BaseTask method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(in module desispec.pipeline.control)
getrms() (in module desispec.qa.qalib)
gpu_specter_check_input_options() (in module desispec.scripts.extract)
H
header() (in module desispec.qa.html)
header2night() (in module desispec.util)
header2wave() (in module desispec.io.util)
healpix_degrade_fixed() (in module desispec.util)
healpix_subdirectory() (in module desispec.io.util)
I
id_arc_lines_using_triplets() (in module desispec.bootcalib)
initdb() (desispec.pipeline.db.DataBasePostgres method)
(desispec.pipeline.db.DataBaseSqlite method)
Initialize (class in desispec.quicklook.procalgs)
insert() (desispec.pipeline.tasks.base.BaseTask method)
Integrate_Spec (class in desispec.qa.qa_quicklook)
integrate_spec() (in module desispec.qa.qalib)
interpolate_on_parameter_grid() (in module desispec.fluxcalibration)
io_qa() (desispec.quicklook.qlconfig.Config method)
io_qa_pa() (desispec.quicklook.qlconfig.Config method)
is_svn_current() (in module desispec.io.util)
isStdStar() (in module desispec.fluxcalibration)
itemindices() (in module desispec.util)
iterfiles() (in module desispec.io.util)
L
legx() (in module desispec.trace_shifts)
load_arcline_list() (in module desispec.bootcalib)
load_data() (in module desispec.database.metadata)
load_db() (in module desispec.pipeline.db)
load_fiberassign() (in module desispec.database.redshift)
load_file() (in module desispec.database.redshift)
load_filter() (in module desispec.io.filters)
load_gaia_filter() (in module desispec.io.filters)
load_gdarc_lines() (in module desispec.bootcalib)
load_legacy_survey_filter() (in module desispec.io.filters)
load_parse_dict() (in module desispec.bootcalib)
load_prod() (in module desispec.pipeline.prod)
load_qa_brick() (in module desispec.io.qa)
load_qa_frame() (in module desispec.io.qa)
load_qa_multiexp() (in module desispec.io.qa)
load_redrock() (in module desispec.database.redshift)
load_simulated_data() (in module desispec.database.metadata)
M
main() (in module desispec.database.metadata)
(in module desispec.database.redshift)
(in module desispec.scripts.stdstars)
make_exposure() (in module desispec.qa.html)
make_exposures() (in module desispec.qa.html)
makepath() (in module desispec.io.util)
mapkeywords() (in module desispec.quicklook.quicklook)
mask32() (in module desispec.util)
match_templates() (in module desispec.fluxcalibration)
mean_psf() (in module desispec.scripts.specex)
merge_psf() (in module desispec.scripts.specex)
mjd2night() (in module desispec.util)
MonitoringAlg (class in desispec.quicklook.qas)
monomials() (in module desispec.trace_shifts)
mpi_count_failures() (in module desispec.util)
N
name_join() (desispec.pipeline.tasks.base.BaseTask method)
name_split() (desispec.pipeline.tasks.base.BaseTask method)
native_endian() (in module desispec.io.util)
nersc_job() (in module desispec.pipeline.scriptgen)
Night (class in desispec.database.metadata)
night2ymd() (in module desispec.util)
normalize_templates() (in module desispec.fluxcalibration)
num_spectra() (desispec.pixgroup.SpectraLite method)
(desispec.spectra.Spectra method)
num_targets() (desispec.pixgroup.SpectraLite method)
(desispec.spectra.Spectra method)
numba_mean() (in module desispec.preproc)
O
ObsList (class in desispec.database.redshift)
offset() (desispec.database.metadata.Tile method)
option_list() (in module desispec.util)
ordered_unique() (in module desispec.util)
orig_SNRFit() (in module desispec.qa.qalib)
overlapping_bricks() (desispec.database.metadata.Tile method)
P
paargs (desispec.quicklook.qlconfig.Config attribute)
Palist (class in desispec.quicklook.qlconfig)
palist (desispec.quicklook.qlconfig.Config attribute)
ParameterException
parse() (in module desispec.scripts.quicklook)
parse_badamps() (in module desispec.io.util)
parse_cameras() (in module desispec.io.util)
parse_date_obs() (in module desispec.calibfinder)
parse_fibers() (in module desispec.util)
parse_int_args() (in module desispec.util)
parse_job_env() (in module desispec.pipeline.scriptgen)
parse_nist() (in module desispec.bootcalib)
parse_nist_tbl() (in module desispec.bootcalib)
parse_pgpass() (in module desispec.database.util)
parse_sec_keyword() (in module desispec.preproc)
paths() (desispec.pipeline.tasks.base.BaseTask method)
petals() (desispec.database.metadata.Tile method)
pid_exists() (in module desispec.util)
PipelineAlg (class in desispec.quicklook.pas)
plot_bias_overscan() (in module desispec.qa.qa_plots_ql)
plot_countpix() (in module desispec.qa.qa_plots_ql)
plot_countspectralbins() (in module desispec.qa.qa_plots_ql)
plot_lpolyhist() (in module desispec.qa.qa_plots_ql)
plot_RMS() (in module desispec.qa.qa_plots_ql)
plot_sky_continuum() (in module desispec.qa.qa_plots_ql)
plot_sky_peaks() (in module desispec.qa.qa_plots_ql)
plot_SNR() (in module desispec.qa.qa_plots_ql)
plot_XWSigma() (in module desispec.qa.qa_plots_ql)
polynomial_fit() (in module desispec.trace_shifts)
postprocessing() (desispec.pipeline.tasks.base.BaseTask method)
(desispec.pipeline.tasks.cframe.TaskCFrame method)
(desispec.pipeline.tasks.extract.TaskExtract method)
(desispec.pipeline.tasks.fiberflat.TaskFiberflat method)
(desispec.pipeline.tasks.fiberflatnight.TaskFiberflatNight method)
(desispec.pipeline.tasks.fluxcalib.TaskFluxCalib method)
(desispec.pipeline.tasks.preproc.TaskPreproc method)
(desispec.pipeline.tasks.psf.TaskPSF method)
(desispec.pipeline.tasks.psfnight.TaskPSFNight method)
(desispec.pipeline.tasks.qadata.TaskQAData method)
(desispec.pipeline.tasks.sky.TaskSky method)
(desispec.pipeline.tasks.starfit.TaskStarFit method)
(desispec.pipeline.tasks.traceshift.TaskTraceShift method)
Preproc (class in desispec.quicklook.procalgs)
preproc() (in module desispec.preproc)
preproc_file() (in module desispec.scripts.preproc)
process_arc() (in module desispec.quicklook.arcprocess)
prod_avg_s2n() (in module desispec.qa.qa_plots)
prod_channel_hist() (in module desispec.qa.qa_plots)
prod_options_name (in module desispec.pipeline.defs)
prod_time_series() (in module desispec.qa.qa_plots)
prod_ZP() (in module desispec.qa.qa_plots)
project() (in module desispec.quicklook.palib)
PSF (class in desispec.quicklook.qlpsf)
Q
q3c_index() (in module desispec.database.redshift)
qa_arc_spec() (in module desispec.bootcalib)
qa_fiber_arcrms() (in module desispec.bootcalib)
qa_fiber_dlamb() (in module desispec.bootcalib)
qa_fiber_Dx() (in module desispec.bootcalib)
qa_fiber_gauss() (in module desispec.bootcalib)
qa_fiber_peaks() (in module desispec.bootcalib)
qa_fiber_trace() (in module desispec.bootcalib)
qa_fiberflat() (in module desispec.fiberflat)
qa_fluxcalib() (in module desispec.fluxcalibration)
qa_skysub() (in module desispec.sky)
qafile_from_framefile() (in module desispec.io.qa)
qaframe_from_frame() (in module desispec.qa.qa_frame)
qalist (desispec.quicklook.qlconfig.Config attribute)
qaprod_root() (in module desispec.io.meta)
QASeverity (class in desispec.quicklook.qas)
ql_2dplot() (in module desispec.quicklook.ql_plotlib)
ql_3dplot() (in module desispec.quicklook.ql_plotlib)
ql_patchplot() (in module desispec.quicklook.ql_plotlib)
ql_qaplot() (in module desispec.quicklook.ql_plotlib)
QLLogger (class in desispec.quicklook.qllogger)
qproc_apply_fiberflat() (in module desispec.qproc.qfiberflat)
qproc_boxcar_extraction() (in module desispec.qproc.qextract)
qproc_compute_fiberflat() (in module desispec.qproc.qfiberflat)
qproc_sky_subtraction() (in module desispec.qproc.qsky)
QuickResolution (class in desispec.quicklook.qlresolution)
R
radius (desispec.database.metadata.Tile attribute)
rawdata_root() (in module desispec.io.meta)
read() (desispec.pixgroup.FrameLite class method)
(desispec.pixgroup.SpectraLite class method)
read_average_flux_calibration() (in module desispec.io.fluxcalibration)
read_bias() (in module desispec.preproc)
read_dark() (in module desispec.preproc)
read_fiberflat() (in module desispec.io.fiberflat)
read_fibermap() (in module desispec.io.fibermap)
read_flux_calibration() (in module desispec.io.fluxcalibration)
read_frame() (in module desispec.io.frame)
read_frame_as_spectra() (in module desispec.io.spectra)
read_image() (in module desispec.io.image)
read_mask() (in module desispec.preproc)
read_meta_frame() (in module desispec.io.frame)
read_params() (in module desispec.io.params)
read_pixflat() (in module desispec.preproc)
read_qa_brick() (in module desispec.io.qa)
read_qa_data() (in module desispec.io.qa)
read_qa_frame() (in module desispec.io.qa)
read_qframe() (in module desispec.qproc.io)
read_raw() (in module desispec.io.raw)
read_sky() (in module desispec.io.sky)
read_spectra() (in module desispec.io.spectra)
read_stdstar_models() (in module desispec.io.fluxcalibration)
read_stdstar_templates() (in module desispec.io.fluxcalibration)
read_tile_spectra() (in module desispec.io.spectra)
read_xytraceset() (in module desispec.io.xytraceset)
recompute_legendre_coefficients() (in module desispec.trace_shifts)
redshift_fit() (in module desispec.fluxcalibration)
reject_cosmic_rays() (in module desispec.cosmics)
reject_cosmic_rays_1d() (in module desispec.cosmics)
reject_cosmic_rays_ala_sdss() (in module desispec.cosmics)
reject_lines() (in module desispec.bootcalib)
replace_prefix() (in module desispec.io.util)
resample_boxcar_frame() (in module desispec.trace_shifts)
resample_flux() (in module desispec.interpolation)
resample_spec() (in module desispec.quicklook.palib)
resample_spectra_lin_or_log() (in module desispec.coaddition)
resample_template() (in module desispec.fluxcalibration)
Resolution (class in desispec.resolution)
ResolutionFit (class in desispec.quicklook.procalgs)
retrieve() (desispec.pipeline.tasks.base.BaseTask method)
run() (desispec.pipeline.tasks.base.BaseTask method)
(in module desispec.pipeline.control)
(in module desispec.scripts.specex)
run_and_update() (desispec.pipeline.tasks.base.BaseTask method)
(desispec.pipeline.tasks.redshift.TaskRedshift method)
(desispec.pipeline.tasks.spectra.TaskSpectra method)
run_cli() (desispec.pipeline.tasks.base.BaseTask method)
run_defaults() (desispec.pipeline.tasks.base.BaseTask method)
run_dist() (in module desispec.pipeline.run)
run_max_mem_proc() (desispec.pipeline.tasks.base.BaseTask method)
run_max_mem_task() (desispec.pipeline.tasks.base.BaseTask method)
run_max_procs() (desispec.pipeline.tasks.base.BaseTask method)
run_scripts() (in module desispec.pipeline.control)
run_task() (in module desispec.pipeline.run)
run_task_list() (in module desispec.pipeline.run)
run_task_list_db() (in module desispec.pipeline.run)
run_task_simple() (in module desispec.pipeline.run)
run_time() (desispec.pipeline.tasks.base.BaseTask method)
runcmd() (in module desispec.util)
runpipeline() (in module desispec.quicklook.quicklook)
S
s2n_flux_astro() (in module desispec.qa.qalib)
s2n_funcs() (in module desispec.qa.qalib)
s2nfit() (in module desispec.qa.qalib)
SchemaMixin (class in desispec.database.redshift)
script() (in module desispec.pipeline.control)
script_bootcalib() (in module desispec.bootcalib)
search_for_framefile() (in module desispec.io.frame)
select() (desispec.spectra.Spectra method)
select_nights() (in module desispec.pipeline.prod)
set_states() (desispec.pipeline.db.DataBase method)
set_states_type() (desispec.pipeline.db.DataBase method)
set_submitted() (desispec.pipeline.db.DataBase method)
set_submitted_type() (desispec.pipeline.db.DataBase method)
setup_db() (in module desispec.database.redshift)
setup_pipeline() (in module desispec.quicklook.quicklook)
shift_ycoef_using_external_spectrum() (in module desispec.trace_shifts)
shorten_filename() (in module desispec.io.meta)
show_meta() (in module desispec.qa.qa_plots)
sigmas_from_arc() (in module desispec.quicklook.arcprocess)
SignalVsNoise() (in module desispec.qa.qalib)
simulate_frame() (desispec.database.metadata.Tile method)
Sky_Continuum (class in desispec.qa.qa_quicklook)
sky_continuum() (in module desispec.qa.qalib)
Sky_Peaks (class in desispec.qa.qa_quicklook)
Sky_Rband (class in desispec.qa.qa_quicklook)
sky_resid() (in module desispec.qa.qalib)
Sky_Residual (class in desispec.qa.qa_quicklook)
skyline_resid() (in module desispec.qa.qa_plots)
SkySub (class in desispec.quicklook.procalgs)
skysub_gauss() (in module desispec.qa.qa_plots)
SkySub_QL (class in desispec.quicklook.procalgs)
SkySub_QP (class in desispec.quicklook.procalgs)
skysub_resid_dual() (in module desispec.qa.qa_plots)
skysub_resid_series() (in module desispec.qa.qa_plots)
slice_fidboundary() (in module desispec.qa.qalib)
sm2sp() (in module desispec.calibfinder)
SN_ratio() (in module desispec.qa.qalib)
sp2sm() (in module desispec.calibfinder)
specprod_root() (in module desispec.io.meta)
Spectra (class in desispec.spectra)
SpectraLite (class in desispec.pixgroup)
spectroperf_resample_spectra() (in module desispec.coaddition)
spline_fit() (in module desispec.linalg)
sprun() (in module desispec.util)
stack() (in module desispec.spectra)
state_colors (in module desispec.pipeline.defs)
state_get() (desispec.pipeline.tasks.base.BaseTask method)
state_set() (desispec.pipeline.tasks.base.BaseTask method)
Status (class in desispec.database.metadata)
status() (in module desispec.pipeline.control)
stdouterr_redirected() (in module desispec.parallel)
subtract_peramp_overscan() (in module desispec.preproc)
subtract_sky() (in module desispec.quicklook.quicksky)
(in module desispec.sky)
sync() (desispec.pipeline.db.DataBase method)
(in module desispec.pipeline.control)
T
take_turns() (in module desispec.parallel)
Target (class in desispec.database.redshift)
target_ids() (desispec.pixgroup.SpectraLite method)
(desispec.spectra.Spectra method)
task_name_sep (in module desispec.pipeline.defs)
task_read() (in module desispec.pipeline.prod)
task_sort() (in module desispec.pipeline.db)
task_states (in module desispec.pipeline.defs)
task_type() (in module desispec.pipeline.tasks.base)
task_write() (in module desispec.pipeline.prod)
TaskCFrame (class in desispec.pipeline.tasks.cframe)
TaskExtract (class in desispec.pipeline.tasks.extract)
TaskFiberflat (class in desispec.pipeline.tasks.fiberflat)
TaskFiberflatNight (class in desispec.pipeline.tasks.fiberflatnight)
TaskFibermap (class in desispec.pipeline.tasks.fibermap)
TaskFluxCalib (class in desispec.pipeline.tasks.fluxcalib)
TaskPreproc (class in desispec.pipeline.tasks.preproc)
TaskPSF (class in desispec.pipeline.tasks.psf)
TaskPSFNight (class in desispec.pipeline.tasks.psfnight)
TaskQAData (class in desispec.pipeline.tasks.qadata)
TaskRawdata (class in desispec.pipeline.tasks.rawdata)
TaskRedshift (class in desispec.pipeline.tasks.redshift)
tasks() (in module desispec.pipeline.control)
TaskSky (class in desispec.pipeline.tasks.sky)
TaskSpectra (class in desispec.pipeline.tasks.spectra)
TaskStarFit (class in desispec.pipeline.tasks.starfit)
TaskTraceShift (class in desispec.pipeline.tasks.traceshift)
Tile (class in desispec.database.metadata)
TimeoutError
to_fits_array() (desispec.resolution.Resolution method)
toplevel() (in module desispec.qa.html)
trace_crude_init() (in module desispec.bootcalib)
trace_fweight() (in module desispec.bootcalib)
Trace_Shifts (class in desispec.qa.qa_quicklook)
Truth (class in desispec.database.redshift)
U
update() (desispec.pipeline.db.DataBase method)
(desispec.spectra.Spectra method)
(in module desispec.pipeline.control)
update_frame_cache() (in module desispec.pixgroup)
update_prod() (in module desispec.pipeline.prod)
update_truth() (in module desispec.database.redshift)
use_mpi() (in module desispec.parallel)
V
validate_badamps() (in module desispec.io.util)
validate_night() (in module desispec.io.meta)
W
wavelength() (desispec.quicklook.qlpsf.PSF method)
wavelength_grid() (desispec.spectra.Spectra method)
weighted_partition() (in module desispec.parallel)
write() (desispec.pixgroup.SpectraLite method)
write_average_flux_calibration() (in module desispec.io.fluxcalibration)
write_bintable() (in module desispec.io.util)
write_fiberflat() (in module desispec.io.fiberflat)
write_fibermap() (in module desispec.io.fibermap)
write_flux_calibration() (in module desispec.io.fluxcalibration)
write_frame() (in module desispec.io.frame)
write_image() (in module desispec.io.image)
write_psf() (in module desispec.bootcalib)
write_psffile() (in module desispec.quicklook.arcprocess)
write_qa_brick() (in module desispec.io.qa)
write_qa_exposure() (in module desispec.io.qa)
write_qa_frame() (in module desispec.io.qa)
write_qa_multiexp() (in module desispec.io.qa)
write_qa_ql() (in module desispec.io.qa)
write_qframe() (in module desispec.qproc.io)
write_raw() (in module desispec.io.raw)
write_sky() (in module desispec.io.sky)
write_spectra() (in module desispec.io.spectra)
write_stdstar_models() (in module desispec.io.fluxcalibration)
write_traces_in_psf() (in module desispec.trace_shifts)
write_xytraceset() (in module desispec.io.xytraceset)
X
x() (desispec.quicklook.qlpsf.PSF method)
Y
y() (desispec.quicklook.qlpsf.PSF method)
yaml_read() (in module desispec.pipeline.prod)
yaml_write() (in module desispec.pipeline.prod)
ymd2night() (in module desispec.util)
Z
ZCat (class in desispec.database.redshift)
ZP_from_calib() (in module desispec.fluxcalibration)
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